RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1144090 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7940061 7940061 PRJNA1144090_P_NODE_121327_length_210_cov_4.744526_g120792_i0 PRJNA1144090 121327 210 4.744526 9.9635046 Desulfocapsa sulfexigens 65555 Bacteria Bacteria 52.8 0.018   NTclustered gi|451904998|gb|CP003985.1| 1167006 g120792 i0 100 0.133333333333333 28 0 13 0 3 30 935159 935132 Desulfocapsa sulfexigens DSM 10523, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfocapsa Desulfocapsa sulfexigens
10490460 10490460 PRJNA1144090_P_NODE_10589_length_866_cov_2.674653_g10156_i0 PRJNA1144090 10589 866 2.674653 23.16249498 Desulfovibrio desulfuricans 876 Bacteria Bacteria 58.4 0.002   NTclustered gi|2884834435|gb|CP176628.1| 876 g10156 i0 97.059 0.0785219399538106 34 1 5 0 180 213 748355 748322 Desulfovibrio desulfuricans strain SFAD67 chromosome, complete genome blastn 68 58.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
16864767 16864767 PRJNA1144090_P_NODE_71714_length_298_cov_2.800000_g71179_i0 PRJNA1144090 71714 298 2.8 8.344 Desulfosarcina ovata 83564 Bacteria Bacteria 67.6 9.89e-7   NTclustered gi|1774952549|dbj|AP021879.1| 2752305 g71179 i0 86.667 0.929530201342282 60 8 20 0 176 235 2114025 2114084 Desulfosarcina ovata subsp. ovata oXyS1 DNA, complete genome blastn 277 67.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina Desulfosarcina ovata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;