RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1144090 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1561909 1561909 PRJNA1144090_P_NODE_40222_length_407_cov_1.595808_g39687_i0 PRJNA1144090 40222 407 1.595808 6.49493856 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.039   NTclustered gi|690464782|emb|LN003565.1| 99802 g39687 i0 100 0.0687960687960688 28 0 7 0 195 222 4095 4122 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0003537 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
7940106 7940106 PRJNA1144090_P_NODE_16887_length_670_cov_3.134003_g16372_i0 PRJNA1144090 16887 670 3.134003 20.9978201 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 54.7 0.019   NTclustered gi|687595263|emb|LK559423.1| 57078 g16372 i0 100 0.0432835820895522 29 0 4 0 336 364 437 465 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0155436 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
9215415 9215415 PRJNA1144090_P_NODE_46328_length_376_cov_1.485149_g45793_i0 PRJNA1144090 46328 376 1.485149 5.58416024 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 56.5 0.003   NTclustered gi|687179432|emb|LN121758.1| 99802 g45793 i0 100 1.13031914893617 30 0 8 0 344 373 1944 1973 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0113478 blastn 425 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
20688618 20688618 PRJNA1144090_P_NODE_28677_length_493_cov_2.533333_g28143_i0 PRJNA1144090 28677 493 2.533333 12.48933169 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.048   NTclustered gi|690682529|emb|LN235129.1| 99802 g28143 i0 100 0.113590263691684 28 0 6 0 410 437 339 312 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0045441 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
21963747 21963747 PRJNA1144090_P_NODE_119698_length_229_cov_4.294872_g119163_i0 PRJNA1144090 119698 229 4.294872 9.83525688 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 54.7 0.006   NTclustered gi|2318773791|ref|XM_051217783.1| 6185 g119163 i0 96.875 0.292576419213974 32 1 14 0 192 223 964 995 Schistosoma haematobium Dual specificity tyrosine-phosphorylation-regulated kinase (DYRK4), mRNA blastn 67 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;