RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1144090 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4114194 4114194 PRJNA1144090_P_NODE_29744_length_483_cov_2.234146_g29210_i0 PRJNA1144090 29744 483 2.234146 10.79092518 Oigolaimella sp. VS-2014 1538701 Nematoda Nematoda 344 6.9299999999999984e-90   NTclustered gi|675118939|gb|KJ877349.1| 1538701 g29210 i0 80 47.527950310559 485 81 99 15 6 482 483 7 Oigolaimella sp. VS-2014 strain RS9010 large subunit ribosomal protein 10 (rpl-10) mRNA, partial cds blastn 22956 344 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Oigolaimella Oigolaimella sp. VS-2014
4114196 4114196 PRJNA1144090_P_NODE_30004_length_480_cov_607.186732_g29470_i0 PRJNA1144090 30004 480 607.186732 2914.4963136 Caenorhabditis remanei 31234 Nematoda Nematoda 52.8 0.047   NTclustered gi|2445383759|ref|XM_053732915.1| 31234 g29470 i0 100 0.116666666666667 28 0 6 0 123 150 657 630 Caenorhabditis remanei uncharacterized protein (GCK72_019189), partial mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
9215017 9215017 PRJNA1144090_P_NODE_121588_length_202_cov_5.131783_g121053_i0 PRJNA1144090 121588 202 5.131783 10.36620166 Cooperia oncophora 27828 Nematoda Nematoda 180 7.73e-41   NTclustered gi|38491404|gb|AY372758.1| 27828 g121053 i0 83.957 42.0940594059406 187 30 93 0 15 201 31 217 Cooperia oncophora actin mRNA, complete cds blastn 8503 180 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora
9215905 9215905 PRJNA1144090_P_NODE_93128_length_260_cov_1.229947_g92593_i0 PRJNA1144090 93128 260 1.229947 3.1978622 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.024   NTclustered gi|687022652|emb|LM525566.1| 174720 g92593 i0 96.875 0.123076923076923 32 0 12 1 170 201 440798 440768 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000003 blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
13786318 13786318 PRJNA1144090_P_NODE_12651_length_788_cov_6.048951_g12193_i0 PRJNA1144090 12651 788 6.048951 47.66573388 Metazoa 33208 Nematoda Nematoda 91.6 1.68e-13   NTclustered gi|2707548438|ref|XM_013445985.2| 51031 g12193 i0 77.16 8.90355329949239 162 33 20 4 164 323 293 134 Necator americanus uncharacterized protein (RB195_007272), partial mRNA blastn 7016 91.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
15590270 15590270 PRJNA1144090_P_NODE_49553_length_362_cov_1519.349481_g49018_i0 PRJNA1144090 49553 362 1519.349481 5500.04512122 Caenorhabditis remanei 31234 Nematoda Nematoda 52.8 0.034   NTclustered gi|2445383759|ref|XM_053732915.1| 31234 g49018 i0 100 0.154696132596685 28 0 8 0 213 240 630 657 Caenorhabditis remanei uncharacterized protein (GCK72_019189), partial mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
16865030 16865030 PRJNA1144090_P_NODE_97054_length_254_cov_1.469613_g96519_i0 PRJNA1144090 97054 254 1.469613 3.73281702 Strongyloides ratti 34506 Nematoda Nematoda 248 2.74e-61   NTclustered gi|1376149319|ref|XM_024642975.1| 34506 g96519 i0 84.585 96.9330708661417 253 35 99 4 3 253 94 344 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_2000414100), partial mRNA blastn 24621 248 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
18138610 18138610 PRJNA1144090_P_NODE_103075_length_249_cov_0.875000_g102540_i0 PRJNA1144090 103075 249 0.875 2.17875 Brugia malayi 6279 Nematoda Nematoda 52.8 0.023   NTclustered gi|2082287633|ref|XM_043081495.1| 6279 g102540 i0 96.875 0.1285140562249 32 0 13 1 142 173 605 575 Brugia malayi Josephin family protein (Bma-atx-3), partial mRNA blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
19413018 19413018 PRJNA1144090_P_NODE_14176_length_741_cov_4.809880_g13701_i0 PRJNA1144090 14176 741 4.80988 35.6412108 Strongyloides ratti 34506 Nematoda Nematoda 239 5.31e-58   NTclustered gi|1376146059|ref|XM_024653581.1| 34506 g13701 i0 79.109 8.90013495276653 359 65 48 9 343 696 220 573 Strongyloides ratti NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial (SRAE_2000250600), partial mRNA blastn 6595 239 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
19413940 19413940 PRJNA1144090_P_NODE_98756_length_251_cov_2.112360_g98221_i0 PRJNA1144090 98756 251 2.11236 5.3020236 Rhabditidoides sp. VS-2014 1538705 Nematoda Nematoda 87.9 6.24e-13   NTclustered gi|675118780|gb|KJ877251.1| 1538705 g98221 i0 83.696 23.3466135458167 92 15 37 0 160 251 3228 3137 Rhabditidoides sp. VS-2014 strain RS5443 28S ribosomal RNA gene, partial sequence blastn 5860 87.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Rhabditidoides Rhabditidoides sp. VS-2014
24513605 24513605 PRJNA1144090_P_NODE_79780_length_282_cov_1.842105_g79245_i0 PRJNA1144090 79780 282 1.842105 5.1947361 Necator americanus 51031 Nematoda Nematoda 52.8 0.026   NTclustered gi|2707542806|ref|XM_013436861.2| 51031 g79245 i0 100 0.099290780141844 28 0 10 0 121 148 1620 1593 Necator americanus uncharacterized protein (RB195_005476), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
24513734 24513734 PRJNA1144090_P_NODE_91500_length_262_cov_1.830688_g90965_i0 PRJNA1144090 91500 262 1.830688 4.79640256 Strongyloides ratti 34506 Nematoda Nematoda 52.8 0.024   NTclustered gi|1376153731|ref|XM_024649585.1| 34506 g90965 i0 100 0.106870229007634 28 0 11 0 123 150 3385 3358 Strongyloides ratti SAP domain-containing protein (SRAE_X000105100), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;