RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA1144090 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1032990 1032990 PRJNA1144090_P_NODE_48561_length_366_cov_2.972696_g48026_i0 PRJNA1144090 48561 366 2.972696 10.88006736 root 1 Root_unresolved Root_unresolved 220 9e-53   NTclustered gi|1002446769|ref|XM_015803327.1| 157538 g48026 i0 80.969 63.7513661202186 289 45 78 6 44 330 138 418 Leptomonas pyrrhocoris cyclophilin a mRNA blastn 23333 222 0.990990990990991 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
1561510 1561510 PRJNA1144090_P_NODE_108642_length_245_cov_1.790698_g108107_i0 PRJNA1144090 108642 245 1.790698 4.3872101 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 246 9.449999999999999e-61   NTclustered gi|1673136123|ref|XM_029370860.1| 83891 g108107 i0 85.837 30.4979591836735 233 32 95 1 14 245 121 353 Trypanosoma conorhini GTP-binding nuclear protein rtb2 (Tco025E_03944), partial mRNA blastn 7472 246 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
2838183 2838183 PRJNA1144090_P_NODE_48903_length_365_cov_2.010274_g48368_i0 PRJNA1144090 48903 365 2.010274 7.3375001 Paratrypanosoma confusum 1470209 Euglenozoa other_Eukaryota 200 1.1699999999999999e-46   NTclustered gi|452769375|gb|KC534818.1| 1470209 g48368 i0 78.438 6.47123287671233 320 60 87 6 3 319 347 34 Trypanosomatidae sp. TS-2013 clone C15375L11079o25 hypothetical protein gene, partial cds blastn 2362 200 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Paratrypanosoma Paratrypanosoma confusum
6664779 6664779 PRJNA1144090_P_NODE_107146_length_246_cov_1.462428_g106611_i0 PRJNA1144090 107146 246 1.462428 3.59757288 Leishmania braziliensis 5660 Euglenozoa other_Eukaryota 54.7 0.006   NTclustered gi|2593255386|emb|OY748495.1| 5660 g106611 i0 88.636 0.41869918699187 44 5 18 0 38 81 62005 61962 Leishmania braziliensis isolate MHOM/BR/75/M2903 genome assembly, chromosome: 09 blastn 103 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
7940881 7940881 PRJNA1144090_P_NODE_88227_length_267_cov_2.747423_g87692_i0 PRJNA1144090 88227 267 2.747423 7.33561941 Trypanosoma grayi 71804 Euglenozoa other_Eukaryota 54.7 0.007   NTclustered gi|686638042|ref|XM_009313192.1| 71804 g87692 i0 94.286 0.131086142322097 35 2 13 0 169 203 4089 4055 Trypanosoma grayi hypothetical protein partial mRNA blastn 35 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi
10491045 10491045 PRJNA1144090_P_NODE_5369_length_1232_cov_4.110440_g5073_i0 PRJNA1144090 5369 1232 4.11044 50.6406208 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 58.4 0.003   NTclustered gi|2787705363|ref|XM_067333374.1| 715481 g5073 i0 100 0.0251623376623377 31 0 3 0 1106 1136 2733 2703 Trypanosoma melophagium uncharacterized protein (LSM04_003686), partial mRNA blastn 31 58.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium
10491280 10491280 PRJNA1144090_P_NODE_7589_length_1035_cov_3.041580_g7228_i0 PRJNA1144090 7589 1035 3.04158 31.480353 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 56.5 0.008   NTclustered gi|2787695640|ref|XM_067335996.1| 715481 g7228 i0 96.97 0.0318840579710145 33 1 3 0 498 530 2446 2478 Trypanosoma melophagium zinc finger protein (LSM04_001465), partial mRNA blastn 33 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium
15589829 15589829 PRJNA1144090_P_NODE_115473_length_241_cov_1.833333_g114938_i0 PRJNA1144090 115473 241 1.833333 4.41833253 Strigomonas oncopelti 5657 Euglenozoa other_Eukaryota 156 1.6100000000000002e-33   NTclustered gi|537372119|gb|KF160144.1| 5657 g114938 i0 79.654 14.9045643153527 231 35 93 9 17 241 405 181 Strigomonas oncopelti cysteine desulfurase gene, complete cds blastn 3592 156 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas oncopelti
21964344 21964344 PRJNA1144090_P_NODE_67738_length_307_cov_14.730769_g67203_i0 PRJNA1144090 67738 307 14.730769 45.22346083 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 58.4 6.16e-4   NTclustered gi|2787711021|ref|XM_067338658.1| 715481 g67203 i0 97.059 0.214983713355049 34 1 11 0 194 227 1340 1307 Trypanosoma melophagium uncharacterized protein (LSM04_008726), partial mRNA blastn 66 58.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium
23239552 23239552 PRJNA1144090_P_NODE_28859_length_491_cov_2.894737_g28325_i0 PRJNA1144090 28859 491 2.894737 14.21315867 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.048   NTclustered gi|1031970232|gb|CP015666.1| 85057 g28325 i0 100 0.0570264765784114 28 0 6 0 164 191 924056 924029 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI16, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
23239909 23239909 PRJNA1144090_P_NODE_64499_length_315_cov_3.719008_g63964_i0 PRJNA1144090 64499 315 3.719008 11.7148752 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 56.5 0.002   NTclustered gi|1031970218|gb|CP015652.1| 85057 g63964 i0 92.5 0.723809523809524 40 1 12 2 212 250 393161 393123 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI2, partial sequence blastn 228 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;