RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1144090 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1561738 1561738 PRJNA1144090_P_NODE_23822_length_549_cov_8.382353_g23292_i0 PRJNA1144090 23822 549 8.382353 46.01911797 Synchytrium microbalum 1806994 Fungi Fungi 381 6.069999999999999e-101   NTclustered gi|1759154818|ref|XM_031169817.1| 1806994 g23292 i0 81.938 111.342440801457 454 78 82 4 39 490 922 1373 Synchytrium microbalum uncharacterized protein (SmJEL517_g03889), partial mRNA blastn 61127 381 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
6665118 6665118 PRJNA1144090_P_NODE_35146_length_439_cov_1.890710_g34611_i0 PRJNA1144090 35146 439 1.89071 8.3002169 Fimicolochytrium jonesii 1396493 Fungi Fungi 285 3.84e-72   NTclustered gi|2432057110|ref|XM_053069402.1| 1396493 g34611 i0 78.507 97.2346241457859 442 89 100 5 1 439 671 233 Fimicolochytrium jonesii ribosomal protein S7 domain-containing protein (EV422DRAFT_516776), mRNA blastn 42686 285 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
11765857 11765857 PRJNA1144090_P_NODE_31910_length_465_cov_1.647959_g31375_i0 PRJNA1144090 31910 465 1.647959 7.66300935 Phlyctochytrium arcticum 1117335 Fungi Fungi 119 4.39e-22   NTclustered gi|82398562|gb|DQ273826.1| 1117335 g31375 i0 88.776 0.210752688172043 98 10 21 1 369 465 2714 2617 Triparticalcar arcticum isolate AFTOL-ID 696 28S ribosomal RNA gene, partial sequence blastn 98 119 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium arcticum
14316241 14316241 PRJNA1144090_P_NODE_41612_length_399_cov_2.665644_g41077_i0 PRJNA1144090 41612 399 2.665644 10.63591956 Synchytrium microbalum 1806994 Fungi Fungi 320 9.49e-83   NTclustered gi|1759163857|ref|XM_031171354.1| 1806994 g41077 i0 82.825 188.501253132832 361 58 90 3 1 359 2598 2956 Synchytrium microbalum uncharacterized protein (SmJEL517_g05428), partial mRNA blastn 75212 320 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
17610652 17610652 PRJNA1144090_P_NODE_114414_length_242_cov_0.911243_g113879_i0 PRJNA1144090 114414 242 0.911243 2.20520806 Batrachochytrium 100474 Fungi Fungi 62.1 3.62e-5   NTclustered gi|2897835648|gb|CP161925.1| 109871 g113879 i0 94.872 0.322314049586777 39 2 16 0 146 184 1116809 1116847 Batrachochytrium dendrobatidis strain JEL423 chromosome 3 blastn 78 62.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;