RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1144090 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19412853 19412853 PRJNA1144090_P_NODE_104836_length_248_cov_0.880000_g104301_i0 PRJNA1144090 104836 248 0.88 2.1824 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 60.2 1.34e-4   NTclustered gi|2893356066|emb|OZ220489.1| 3022862 g104301 i0 100 2.20564516129032 32 0 13 0 84 115 571748 571779 MAG: Tepidiformaceae bacterium isolate fe7a5560-ebd3-4005-b60b-c4614588a40b genome assembly, chromosome: 1 blastn 547 60.2 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium
19413470 19413470 PRJNA1144090_P_NODE_56776_length_337_cov_1.840909_g56241_i0 PRJNA1144090 56776 337 1.840909 6.20386333 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 54.7 0.009   NTclustered gi|2814788335|emb|OY760861.2| 3022862 g56241 i0 100 0.178041543026706 29 0 9 0 71 99 1453681 1453709 MAG: Tepidiformaceae bacterium isolate 815c9385-4915-413f-8b4b-d9ebc7d9cf62 genome assembly, chromosome: 1 blastn 60 54.7 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium
21964135 21964135 PRJNA1144090_P_NODE_47818_length_369_cov_3.077703_g47283_i0 PRJNA1144090 47818 369 3.077703 11.35672407 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 159 2.01e-34   NTclustered gi|2531948656|emb|OY282446.1| 3022862 g47283 i0 86 10.1246612466125 150 19 40 2 38 186 1125597 1125745 MAG: Tepidiformaceae bacterium genome assembly, chromosome: 1 blastn 3736 159 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;