RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1144090 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6664784 6664784 PRJNA1144090_P_NODE_108006_length_246_cov_0.890173_g107471_i0 PRJNA1144090 108006 246 0.890173 2.18982558 Striatella unipunctata 210618 SAR_Eukaryotes SAR_Eukaryotes 121 6.01e-23   NTclustered gi|2862228843|gb|PQ645477.1| 210618 g107471 i0 87.5 17.4878048780488 104 13 42 0 1 104 562 459 Striatella unipunctata isolate AGSB0270 small subunit ribosomal RNA gene, partial sequence blastn 4302 121 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Striatellales Striatellaceae Striatella Striatella unipunctata
8686098 8686098 PRJNA1144090_P_NODE_22067_length_575_cov_2.039841_g21541_i0 PRJNA1144090 22067 575 2.039841 11.72908575 root 1 Root_unresolved Root_unresolved 73.1 4.36e-8   NTclustered gi|2026158947|ref|NC_054334.1| 444606 g21541 i0 97.619 5.40521739130435 42 1 7 0 524 565 29344 29385 Eucampia zodiacus strain CNS00060 mitochondrion, complete genome blastn 3108 73.1 1 Eukaryota Sar   Bacillariophyta Mediophyceae Hemiaulales Hemiaulaceae Eucampia Eucampia zodiacus
21964412 21964412 PRJNA1144090_P_NODE_74498_length_293_cov_1.218182_g73963_i0 PRJNA1144090 74498 293 1.218182 3.56927326 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.027   NTclustered gi|224010059|ref|XM_002293952.1| 296543 g73963 i0 100 0.0955631399317406 28 0 10 0 57 84 78 51 Thalassiosira pseudonana CCMP1335 predicted protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;