RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1144090 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
286779 286779 PRJNA1144090_P_NODE_100461_length_250_cov_1.740113_g99926_i0 PRJNA1144090 100461 250 1.740113 4.3502825 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 424 4.16e-114   NTclustered gi|112980855|gb|DQ829659.1| 171953 g99926 i0 97.189 99.312 249 7 99 0 1 249 631 879 Uncultured Acidobacteria bacterium clone DON16 23S ribosomal RNA gene, partial sequence blastn 24828 424 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
2838223 2838223 PRJNA1144090_P_NODE_52063_length_353_cov_2.185714_g51528_i0 PRJNA1144090 52063 353 2.185714 7.71557042 Geothrix sp. 21YS21S-2 3068893 Bacteria Bacteria 315 3.86e-81   NTclustered gi|2566094019|gb|CP132910.1| 3068893 g51528 i0 85.479 88.6543909348442 303 42 86 2 24 325 2631983 2632284 Geothrix sp. 21YS21S-2 chromosome, complete genome blastn 31295 315 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-2
23239549 23239549 PRJNA1144090_P_NODE_28799_length_492_cov_2.128878_g28265_i0 PRJNA1144090 28799 492 2.128878 10.47407976 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 689 0   NTclustered gi|31789464|gb|AY281356.1| 171953 g28265 i0 92.057 114.613821138211 491 37 99 2 2 492 11625 12113 Uncultured Acidobacteria bacterium clone 41b15 genomic sequence blastn 56390 689 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;