RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 6 ✖

bioproject 1

  • PRJNA1144090 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
286907 286907 PRJNA1144090_P_NODE_116221_length_241_cov_0.916667_g115686_i0 PRJNA1144090 116221 241 0.916667 2.20916747 Archaeoglobus sulfaticallidus 1316941 Archaea Archaea 54.7 0.006   NTclustered gi|484591393|gb|CP005290.1| 387631 g115686 i0 96.97 0.136929460580913 33 0 13 1 142 173 218801 218833 Archaeoglobus sulfaticallidus PM70-1, complete genome blastn 33 54.7 1 Archaea   Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus sulfaticallidus
5390604 5390604 PRJNA1144090_P_NODE_51545_length_355_cov_2.021277_g51010_i0 PRJNA1144090 51545 355 2.021277 7.17553335 Methanosarcina barkeri 2208 Archaea Archaea 54.7 0.009   NTclustered gi|827396966|gb|CP008746.1| 796385 g51010 i0 100 0.0816901408450704 29 0 8 0 86 114 3731152 3731180 Methanosarcina barkeri CM1, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri
6665558 6665558 PRJNA1144090_P_NODE_74266_length_293_cov_1.936364_g73731_i0 PRJNA1144090 74266 293 1.936364 5.67354652 Halorientalis marina 2931976 Archaea Archaea 54.7 0.008   NTclustered gi|2225350885|gb|CP095487.1| 2931976 g73731 i0 96.875 0.109215017064846 32 1 11 0 154 185 660418 660449 Halorientalis marina strain GDY88 chromosome, complete genome blastn 32 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorientalis Halorientalis marina
7939975 7939975 PRJNA1144090_P_NODE_111567_length_244_cov_0.900585_g111032_i0 PRJNA1144090 111567 244 0.900585 2.1974274 Natribaculum breve 1419050 Archaea Archaea 52.8 0.022   NTclustered gi|2224381021|gb|CP095390.1| 1419050 g111032 i0 100 0.114754098360656 28 0 11 0 18 45 2199606 2199579 Natribaculum breve strain TRM20010 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natribaculum Natribaculum breve
11765819 11765819 PRJNA1144090_P_NODE_28330_length_497_cov_1.275943_g27796_i0 PRJNA1144090 28330 497 1.275943 6.34143671 Methanosphaera stadtmanae 2317 Archaea Archaea 54.7 0.013   NTclustered gi|1721134173|emb|LR698975.1| 2317 g27796 i0 100 0.0583501006036217 29 0 6 0 401 429 1447215 1447243 Methanosphaera stadtmanae isolate MGYG-HGUT-02164 genome assembly, chromosome: 1 blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae
21963656 21963656 PRJNA1144090_P_NODE_109238_length_245_cov_0.895349_g108703_i0 PRJNA1144090 109238 245 0.895349 2.19360505 Natrononativus amylolyticus 2963434 Archaea Archaea 52.8 0.022   NTclustered gi|2274417431|gb|CP101458.1| 2963434 g108703 i0 100 0.114285714285714 28 0 11 0 44 71 2451136 2451163 Natrononativus amylolyticus strain CGA73 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrononativus Natrononativus amylolyticus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;