RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 8 ✖

bioproject 1

  • PRJNA1144090 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6665642 6665642 PRJNA1144090_P_NODE_82486_length_277_cov_1.911765_g81951_i0 PRJNA1144090 82486 277 1.911765 5.29558905 Candidatus Saccharibacteria bacterium oral taxon 955 2572087 Bacteria Bacteria 468 2.14e-127   NTclustered gi|1663049602|gb|CP040008.1| 2572087 g81951 i0 97.112 348.451263537906 277 8 100 0 1 277 138975 138699 Candidatus Saccharibacteria bacterium oral taxon 955 strain PM004 chromosome, complete genome blastn 96521 468 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 955
15060668 15060668 PRJNA1144090_P_NODE_121732_length_198_cov_4.088000_g121197_i0 PRJNA1144090 121732 198 4.088 8.09424 Candidatus Nanosynbacteraceae 2093822 Bacteria Bacteria 320 4.26e-83   NTclustered gi|2306607015|emb|OX335598.1| 2026720 g121197 i0 95.939 140.641414141414 197 8 99 0 2 198 79814 79618 Candidatus Saccharibacteria bacterium isolate PRJEB56001 genome assembly, chromosome: contig00001 blastn 27847 320 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
15590196 15590196 PRJNA1144090_P_NODE_42093_length_397_cov_1.425926_g41558_i0 PRJNA1144090 42093 397 1.425926 5.66092622 Candidatus Poribacteria bacterium 2026781 Bacteria Bacteria 52.8 0.038   NTclustered gi|2531976036|emb|OY282374.1| 2026781 g41558 i0 100 0.0705289672544081 28 0 7 0 161 188 4288561 4288588 MAG: Candidatus Poribacteria bacterium genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium
15590417 15590417 PRJNA1144090_P_NODE_62793_length_320_cov_1.829960_g62258_i0 PRJNA1144090 62793 320 1.82996 5.855872 Candidatus Saccharibacteria bacterium RAAC3_TM7_1 1394711 Bacteria Bacteria 436 7.089999999999999e-118   NTclustered gi|563353835|gb|CP006915.1| 1394711 g62258 i0 91.304 68.91875 322 24 100 4 1 320 451999 451680 Candidatus Saccharibacteria bacterium RAAC3_TM7_1, complete genome blastn 22054 436 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium RAAC3_TM7_1
19413193 19413193 PRJNA1144090_P_NODE_30116_length_480_cov_1.577396_g29582_i0 PRJNA1144090 30116 480 1.577396 7.5715008 Candidatus Falkowbacteria bacterium 2053554 Bacteria Bacteria 58.4 0.001   NTclustered gi|2801818892|emb|OZ173682.1| 2053554 g29582 i0 97.059 0.141666666666667 34 1 7 0 102 135 102078 102111 Candidatus Falkowbacteria bacterium isolate Fred.cMAG.1 genome assembly, chromosome: 1 blastn 68 58.4 1 Bacteria Bacteria candidate phyla   Candidatus Falkowiibacteriota         Candidatus Falkowbacteria bacterium
19413682 19413682 PRJNA1144090_P_NODE_75756_length_290_cov_1.654378_g75221_i0 PRJNA1144090 75756 290 1.654378 4.7976962 Candidatus Mycosynbacter amalyticus 2665156 Bacteria Bacteria 457 4.8699999999999985e-124   NTclustered gi|1799615131|gb|CP045921.1| 2665156 g75221 i0 95.189 261.355172413793 291 11 99 3 1 289 220710 220421 Candidatus Mycosynbacter amalyticus isolate JR1 chromosome, complete genome blastn 75793 457 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Mycosynbacter Candidatus Mycosynbacter amalyticus
21434997 21434997 PRJNA1144090_P_NODE_98957_length_251_cov_1.702247_g98422_i0 PRJNA1144090 98957 251 1.702247 4.27263997 Candidatus Nanosynbacter 2093823 Bacteria Bacteria 464 2.47e-126   NTclustered gi|1842054184|gb|CP039999.1| 713059 g98422 i0 100 238.338645418327 251 0 100 0 1 251 142472 142222 Candidatus Saccharibacteria bacterium oral taxon 488 strain CM001 chromosome, complete genome blastn 59823 464 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 488
21963580 21963580 PRJNA1144090_P_NODE_100618_length_250_cov_1.542373_g100083_i0 PRJNA1144090 100618 250 1.542373 3.8559325 Candidatus Nanogingivalaceae bacterium 2725942 Bacteria Bacteria 451 1.91e-122   NTclustered gi|2070571752|gb|CP072208.2| 2725942 g100083 i0 99.2 72.612 250 2 100 0 1 250 111595 111346 MAG: Candidatus Nanogingivalaceae bacterium isolate JCVI_27_bin.3 chromosome, complete genome blastn 18153 451 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanosyncoccalia Candidatus Nanogingivales Candidatus Nanogingivalaceae   Candidatus Nanogingivalaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;