RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1144090" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 8 ✖

bioproject 1

  • PRJNA1144090 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
287612 287612 PRJNA1144090_P_NODE_70321_length_301_cov_3.811404_g69786_i0 PRJNA1144090 70321 301 3.811404 11.47232604 Thecamonas trahens 529818 Root_unresolved Root_unresolved 254 7.15e-63   NTclustered gi|923132712|ref|XM_013904368.1| 461836 g69786 i0 82 13.2458471760797 300 52 99 2 3 301 635 933 Thecamonas trahens ATCC 50062 actin-like protein 3 (AMSG_03466), partial mRNA blastn 3987 254 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
1561456 1561456 PRJNA1144090_P_NODE_101442_length_250_cov_0.870056_g100907_i0 PRJNA1144090 101442 250 0.870056 2.17514 Thecamonas trahens 529818 Root_unresolved Root_unresolved 141 4.7e-29   NTclustered gi|923123658|ref|XM_013899844.1| 461836 g100907 i0 83.23 3.324 161 19 64 7 68 227 421 268 Thecamonas trahens ATCC 50062 ubiquitin/ribosomal protein S27 fusion protein (AMSG_08067), partial mRNA blastn 831 141 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
4114494 4114494 PRJNA1144090_P_NODE_59944_length_328_cov_1.521569_g59409_i0 PRJNA1144090 59944 328 1.521569 4.99074632 Thecamonas trahens 529818 Root_unresolved Root_unresolved 228 4.7799999999999986e-55   NTclustered gi|923138884|ref|XM_013907453.1| 461836 g59409 i0 80.678 18.5640243902439 295 55 90 2 7 300 1271 978 Thecamonas trahens ATCC 50062 elongation factor 2 (AMSG_00036), mRNA blastn 6089 228 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
15590415 15590415 PRJNA1144090_P_NODE_62713_length_320_cov_2.311741_g62178_i0 PRJNA1144090 62713 320 2.311741 7.3975712 Thecamonas trahens 529818 Root_unresolved Root_unresolved 298 3.49e-76   NTclustered gi|923138884|ref|XM_013907453.1| 461836 g62178 i0 88.306 48.91875 248 29 78 0 71 318 324 571 Thecamonas trahens ATCC 50062 elongation factor 2 (AMSG_00036), mRNA blastn 15654 298 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
20688502 20688502 PRJNA1144090_P_NODE_17997_length_645_cov_9.284965_g17477_i0 PRJNA1144090 17997 645 9.284965 59.88802425 Thecamonas trahens 529818 Root_unresolved Root_unresolved 494 8.86e-135   NTclustered gi|923129792|ref|XM_013902908.1| 461836 g17477 i0 83.549 55.2542635658915 541 76 83 9 101 635 545 12 Thecamonas trahens ATCC 50062 Ras-like C3 botulinum toxin substrate 1 (AMSG_04690), mRNA blastn 35639 494 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
20688590 20688590 PRJNA1144090_P_NODE_25797_length_524_cov_5.796009_g25264_i0 PRJNA1144090 25797 524 5.796009 30.37108716 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 154 1.37e-32   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g25264 i0 88.8 21.2671755725191 125 14 24 0 134 258 5302 5178 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11144 154 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
20688927 20688927 PRJNA1144090_P_NODE_56857_length_337_cov_1.458333_g56322_i0 PRJNA1144090 56857 337 1.458333 4.91458221 Thecamonas trahens 529818 Root_unresolved Root_unresolved 246 1.36e-60   NTclustered gi|923120800|ref|XM_013898418.1| 461836 g56322 i0 80.24 89.2670623145401 334 60 98 6 1 331 510 840 Thecamonas trahens ATCC 50062 isocitrate dehydrogenase (AMSG_10027), mRNA blastn 30083 246 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
23239446 23239446 PRJNA1144090_P_NODE_18239_length_640_cov_4.051146_g17718_i0 PRJNA1144090 18239 640 4.051146 25.9273344 Thecamonas trahens 529818 Root_unresolved Root_unresolved 455 4.1500000000000006e-123   NTclustered gi|923128656|ref|XM_013902341.1| 461836 g17718 i0 79.656 90.3671875 639 124 99 5 7 640 1187 550 Thecamonas trahens ATCC 50062 actin-like protein 2 (AMSG_05368), mRNA blastn 57835 455 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;