RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1143173" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1143173 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10490080 10490080 PRJNA1143173_P_NODE_37689_length_234_cov_8.049689_g37663_i0 PRJNA1143173 37689 234 8.049689 18.83627226 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 154 5.5800000000000005e-33   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g37663 i0 79.186 0.944444444444444 221 46 94 0 6 226 3364327 3364107 Luteolibacter sp. SL250 chromosome blastn 221 154 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
13040144 13040144 PRJNA1143173_P_NODE_34871_length_244_cov_1.695906_g34845_i0 PRJNA1143173 34871 244 1.695906 4.13801064 Horticoccus luteus 2862869 Bacteria Bacteria 213 9.540000000000001e-51   NTclustered gi|2077391884|gb|CP080507.1| 2862869 g34845 i0 83.857 0.913934426229508 223 36 91 0 1 223 2934400 2934622 Horticoccus luteus strain KSB-15 chromosome, complete genome blastn 223 213 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Horticoccus Horticoccus luteus
15588844 15588844 PRJNA1143173_P_NODE_13113_length_299_cov_9.110619_g13087_i0 PRJNA1143173 13113 299 9.110619 27.24075081 Sulfuriroseicoccus oceanibius 2707525 Bacteria Bacteria 56.5 0.002   NTclustered gi|1953472588|gb|CP066776.1| 2707525 g13087 i0 92.5 0.133779264214047 40 2 13 1 166 204 1849572 1849533 Sulfuriroseicoccus oceanibius strain T37 chromosome, complete genome blastn 40 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Sulfuriroseicoccus Sulfuriroseicoccus oceanibius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;