RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1143173" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1143173 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
285842 285842 PRJNA1143173_P_NODE_10241_length_310_cov_4.126582_g10215_i0 PRJNA1143173 10241 310 4.126582 12.7924042 Geomonas paludis 2740185 Bacteria Bacteria 122 2.1799999999999999e-23   NTclustered gi|2233265061|gb|CP096574.1| 2740185 g10215 i0 85.47 0.37741935483871 117 17 38 0 194 310 916872 916756 Geomonas paludis strain RG22 chromosome, complete genome blastn 117 122 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas paludis
8685865 8685865 PRJNA1143173_P_NODE_30827_length_255_cov_5.642857_g30801_i0 PRJNA1143173 30827 255 5.642857 14.38928535 Geotalea 2910589 Bacteria Bacteria 231 2.7699999999999997e-56   NTclustered gi|470481994|ref|NR_076507.1| 351604 g30801 i0 84.016 265.301960784314 244 35 95 4 10 250 2933 2691 Geobacter uraniireducens strain Rf4 23S ribosomal RNA gene, complete sequence blastn 67652 231 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea uraniireducens
14315217 14315217 PRJNA1143173_P_NODE_28632_length_261_cov_7.829787_g28606_i0 PRJNA1143173 28632 261 7.829787 20.43574407 Desulfuromonas soudanensis 1603606 Bacteria Bacteria 165 2.93e-36   NTclustered gi|924528553|gb|CP010802.1| 1603606 g28606 i0 78.295 21.9463601532567 258 54 98 2 3 259 1553412 1553668 Desulfuromonas soudanensis strain WTL chromosome, complete genome blastn 5728 165 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas soudanensis
23238503 23238503 PRJNA1143173_P_NODE_21419_length_283_cov_2.166667_g21393_i0 PRJNA1143173 21419 283 2.166667 6.13166761 Desulfomicrobium orale 132132 Bacteria Bacteria 523 4.5999999999999983e-144   NTclustered gi|987456218|gb|CP014230.1| 888061 g21393 i0 100 1 283 0 100 0 1 283 1386607 1386889 Desulfomicrobium orale DSM 12838 chromosome, complete genome blastn 283 523 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium orale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;