RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1143173" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1143173 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1561148 1561148 PRJNA1143173_P_NODE_39062_length_229_cov_8.000000_g39036_i0 PRJNA1143173 39062 229 8 18.32 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 97.1 9.31e-16   NTclustered gi|2891481993|emb|OZ219765.1| 2026734 g39036 i0 95.082 0.834061135371179 61 3 27 0 14 74 3636815 3636755 MAG: Dehalococcoidia bacterium isolate 2efd49d1-a845-418d-b650-c606456da4a2 genome assembly, chromosome: 2 blastn 191 97.1 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
6664492 6664492 PRJNA1143173_P_NODE_42226_length_213_cov_5.935714_g42200_i0 PRJNA1143173 42226 213 5.935714 12.64307082 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 104 5.1e-18   NTclustered gi|2874254066|emb|OY970149.1| 1672391 g42200 i0 92.958 0.333333333333333 71 5 33 0 12 82 541657 541727 MAG: uncultured Chloroflexia bacterium isolate MFD05747.bin.c.2 genome assembly, chromosome: 1 blastn 71 104 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
23238890 23238890 PRJNA1143173_P_NODE_37879_length_234_cov_3.037267_g37853_i0 PRJNA1143173 37879 234 3.037267 7.10720478 Herpetosiphon aurantiacus 65 Bacteria Bacteria 311 3.13e-80   NTclustered gi|159889572|gb|CP000875.1| 316274 g37853 i0 90.598 1 234 22 100 0 1 234 4404991 4405224 Herpetosiphon aurantiacus DSM 785, complete genome blastn 234 311 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
24512464 24512464 PRJNA1143173_P_NODE_42300_length_212_cov_12.647482_g42274_i0 PRJNA1143173 42300 212 12.647482 26.81266184 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 102 1.82e-17   NTclustered gi|2874254102|emb|OY970185.1| 1672391 g42274 i0 85.567 0.457547169811321 97 14 46 0 110 206 3094293 3094389 MAG: uncultured Chloroflexia bacterium isolate MFD06435.bin.c.3 genome assembly, chromosome: 1 blastn 97 102 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;