RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1143173" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1143173 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
286508 286508 PRJNA1143173_P_NODE_40721_length_222_cov_5.402685_g40695_i0 PRJNA1143173 40721 222 5.402685 11.9939607 Geothrix sp. 21YS21S-2 3068893 Bacteria Bacteria 89.8 1.5e-13   NTclustered gi|2566094019|gb|CP132910.1| 3068893 g40695 i0 81.905 5.63513513513514 105 19 47 0 118 222 64346 64450 Geothrix sp. 21YS21S-2 chromosome, complete genome blastn 1251 89.8 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-2
1560766 1560766 PRJNA1143173_P_NODE_21102_length_283_cov_15.166667_g21076_i0 PRJNA1143173 21102 283 15.166667 42.92166761 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 235 2.4199999999999997e-57   NTclustered gi|2874253862|emb|OY969918.1| 171953 g21076 i0 81.851 54.1872791519435 281 49 99 2 2 281 2448524 2448803 MAG: uncultured Acidobacteriota bacterium isolate MFD04967.bin.c.4 genome assembly, chromosome: 1 blastn 15335 235 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
2837363 2837363 PRJNA1143173_P_NODE_42223_length_213_cov_6.114286_g42197_i0 PRJNA1143173 42223 213 6.114286 13.02342918 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 100 6.6e-17   NTclustered gi|2893356059|emb|OZ220482.1| 2651171 g42197 i0 86.667 6.86384976525822 90 12 42 0 124 213 131333 131244 MAG: Thermoanaerobaculia bacterium isolate 1ba308f5-42e2-4878-81ff-2dc7ade272f8 genome assembly, chromosome: 1 blastn 1462 100 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
11764849 11764849 PRJNA1143173_P_NODE_24730_length_273_cov_3.140000_g24704_i0 PRJNA1143173 24730 273 3.14 8.5722 Terriglobus roseus 392734 Bacteria Bacteria 63.9 1.16e-5   NTclustered gi|390410848|gb|CP003379.1| 926566 g24704 i0 100 0.249084249084249 34 0 12 0 17 50 5140352 5140385 Terriglobus roseus DSM 18391, complete genome blastn 68 63.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus roseus
15589059 15589059 PRJNA1143173_P_NODE_21713_length_282_cov_2.186603_g21687_i0 PRJNA1143173 21713 282 2.186603 6.16622046 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 95.3 4.26e-15   NTclustered gi|2874253678|emb|OY969112.1| 171953 g21687 i0 93.651 2.37943262411348 63 4 22 0 1 63 4015337 4015275 MAG: uncultured Acidobacteriota bacterium isolate MFD04212.bin.1.16 genome assembly, chromosome: 1 blastn 671 95.3 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
15589688 15589688 PRJNA1143173_P_NODE_8933_length_310_cov_5.738397_g8907_i0 PRJNA1143173 8933 310 5.738397 17.7890307 Mesoterricola sediminis 2927980 Bacteria Bacteria 122 2.1799999999999999e-23   NTclustered gi|2490895851|dbj|AP027081.1| 2927980 g8907 i0 82.734 15.9064516129032 139 22 45 2 13 150 4097350 4097213 Mesoterricola sediminis W786 DNA, complete genome blastn 4931 122 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Mesoterricola Mesoterricola sediminis
21962848 21962848 PRJNA1143173_P_NODE_19178_length_289_cov_5.199074_g19152_i0 PRJNA1143173 19178 289 5.199074 15.02532386 Thermoanaerobaculum sp. 2510637 Bacteria Bacteria 261 4.08e-65   NTclustered gi|2314712957|dbj|AP024672.1| 2510637 g19152 i0 98 1.01038062283737 150 3 100 0 1 150 2697504 2697653 MAG: Thermoanaerobaculum sp. KatS3mg007 DNA, complete genome blastn 292 261 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia Thermoanaerobaculales Thermoanaerobaculaceae Thermoanaerobaculum Thermoanaerobaculum sp.
23238589 23238589 PRJNA1143173_P_NODE_25279_length_271_cov_5.863636_g25253_i0 PRJNA1143173 25279 271 5.863636 15.89045356 Acidobacteria bacterium Mor1 1660251 Bacteria Bacteria 191 5.05e-44   NTclustered gi|1037405666|gb|CP011806.1| 1660251 g25253 i0 80.075 79.4280442804428 266 45 97 6 10 271 1721976 1722237 Acidobacteria bacterium Mor1 chromosome blastn 21525 191 1 Bacteria Acidobacteriota subdivision 22 Pseudomonadati Acidobacteriota         Acidobacteria bacterium Mor1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;