RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1143173" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA1143173 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21962853 21962853 PRJNA1143173_P_NODE_19318_length_289_cov_2.935185_g19292_i0 PRJNA1143173 19318 289 2.935185 8.48268465 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 523 4.7199999999999987e-144   NTclustered gi|2319582953|ref|XM_051254348.1| 412133 g19292 i0 99.308 100.006920415225 289 2 100 0 1 289 272 560 Trichomonas vaginalis G3 uncharacterized protein (TVAGG3_1003100), partial mRNA blastn 28902 523 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
21963251 21963251 PRJNA1143173_P_NODE_37498_length_235_cov_5.018519_g37472_i0 PRJNA1143173 37498 235 5.018519 11.79351965 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 283 6.859999999999999e-72   NTclustered gi|123386099|ref|XM_001299214.1| 412133 g37472 i0 99.359 54.6936170212766 156 1 66 0 80 235 1 156 Trichomonas vaginalis G3 attachment subunit-related family (TVAGG3_0133310), partial mRNA blastn 12853 283 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
23238324 23238324 PRJNA1143173_P_NODE_13759_length_299_cov_5.557522_g13733_i0 PRJNA1143173 13759 299 5.557522 16.61699078 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 479 1.0799999999999999e-130   NTclustered gi|2319652115|ref|XM_001307235.2| 412133 g13733 i0 94.921 2.10702341137124 315 0 100 1 1 299 698 1012 Trichomonas vaginalis G3 I/LWEQ domain family (TVAGG3_0383380), partial mRNA blastn 630 479 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;