RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1143173" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1143173 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6664148 6664148 PRJNA1143173_P_NODE_26426_length_268_cov_3.805128_g26400_i0 PRJNA1143173 26426 268 3.805128 10.19774304 Leishmania mexicana 5665 Euglenozoa other_Eukaryota 268 2.24e-67   NTclustered gi|401419743|ref|XM_003874312.1| 929439 g26400 i0 84.701 18.3432835820896 268 41 100 0 1 268 2310 2043 Leishmania mexicana MHOM/GT/2001/U1103 elongation factor 2 partial mRNA blastn 4916 268 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania mexicana
13786164 13786164 PRJNA1143173_P_NODE_36431_length_239_cov_3.981928_g36405_i0 PRJNA1143173 36431 239 3.981928 9.51680792 Trypanosoma 5690 Euglenozoa other_Eukaryota 254 5.49e-63   NTclustered gi|1434110548|emb|LS423607.1| 5691 g36405 i0 86.017 86.8117154811715 236 33 99 0 3 238 884 649 Trypanosoma brucei ATP2 gene for Mitochondrial ATP synthase subunit beta, strain Lister strain 427 blastn 20748 254 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
20159175 20159175 PRJNA1143173_P_NODE_28756_length_261_cov_4.739362_g28730_i0 PRJNA1143173 28756 261 4.739362 12.36973482 Leishmania 5658 Euglenozoa other_Eukaryota 217 7.979999999999999e-52   NTclustered gi|401425822|ref|XM_003877347.1| 929439 g28730 i0 81.887 76.1877394636015 265 40 100 8 1 261 599 339 Leishmania mexicana MHOM/GT/2001/U1103 putative heat shock 70-related protein 1, mitochondrial precursor partial mRNA blastn 19885 217 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania mexicana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;