RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1139127" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1139127 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4860382 4860382 PRJNA1139127_P_NODE_38004_length_271_cov_1.777778_g37511_i0 PRJNA1139127 38004 271 1.777778 4.81777838 Trebouxia 13786 Plants Plants 496 9.55e-136   NTclustered gi|2105086|emb|Z95380.1| 13787 g37511 i0 99.631 99.8819188191882 271 1 100 0 1 271 309 39 T.asymmetrica 26S rRNA gene blastn 27068 501 0.99001996007984 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
9960416 9960416 PRJNA1139127_P_NODE_36388_length_280_cov_1.111111_g35895_i0 PRJNA1139127 36388 280 1.111111 3.1111108 Trebouxia 13786 Plants Plants 512 9.85e-141   NTclustered gi|189909382|gb|EU725860.1| 13787 g35895 i0 99.643 101.232142857143 280 1 100 0 1 280 329 608 Trebouxia asymmetrica strain SAG 48.88 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 28345 512 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
15588329 15588329 PRJNA1139127_P_NODE_9433_length_703_cov_4.084127_g8985_i0 PRJNA1139127 9433 703 4.084127 28.71141281 Volvox carteri 3067 Plants Plants 63.9 3.24e-5   NTclustered gi|302834093|ref|XM_002948564.1| 3068 g8985 i0 87.5 0.300142247510669 56 6 8 1 236 290 2071 2126 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_103944), partial mRNA blastn 211 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;