RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1137393" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1137393 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9212763 9212763 PRJNA1137393_P_NODE_5268_length_382_cov_2.279279_g4752_i0 PRJNA1137393 5268 382 2.279279 8.70684578 Synchaeta grimpei 2576784 Rotifera other_Eukaryota 472 2.3599999999999997e-128   NTclustered gi|1839331003|gb|MK905784.1| 2576784 g4752 i0 89.891 92.7958115183246 366 37 96 0 9 374 627 262 Synchaeta grimpei isolate 140416_NH_Whv_A11 cytochrome c oxidase I (COI) gene, partial cds; mitochondrial blastn 35448 472 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Synchaetidae Synchaeta Synchaeta grimpei
20686086 20686086 PRJNA1137393_P_NODE_21957_length_196_cov_1.619048_g21441_i0 PRJNA1137393 21957 196 1.619048 3.17333408 Synchaeta triophthalma 2576788 Rotifera other_Eukaryota 246 7.25e-61   NTclustered gi|1839331029|gb|MK905797.1| 2576788 g21441 i0 89.286 100.188775510204 196 21 100 0 1 196 547 352 Synchaeta triophthalma isolate 140416_NH_A8 cytochrome c oxidase I (COI) gene, partial cds; mitochondrial blastn 19637 246 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Synchaetidae Synchaeta Synchaeta triophthalma

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;