RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1137393" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1137393 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10488368 10488368 PRJNA1137393_P_NODE_65869_length_163_cov_0.912281_g65353_i0 PRJNA1137393 65869 163 0.912281 1.48701803 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 137 3.65e-28   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g65353 i0 83.562 1.4478527607362 146 24 90 0 18 163 3294960 3295105 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 236 137 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
14313787 14313787 PRJNA1137393_P_NODE_8592_length_284_cov_1.821277_g8076_i0 PRJNA1137393 8592 284 1.821277 5.17242668 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 364 2.969999999999999e-96   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g8076 i0 89.825 380.43661971831 285 27 100 2 1 284 3831441 3831724 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 108044 364 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
15587670 15587670 PRJNA1137393_P_NODE_5673_length_364_cov_4.460317_g5157_i0 PRJNA1137393 5673 364 4.460317 16.23555388 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 457 6.2599999999999985e-124   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g5157 i0 89.315 181.43956043956 365 38 100 1 1 364 807215 806851 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 66044 457 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
19410850 19410850 PRJNA1137393_P_NODE_9096_length_275_cov_1.911504_g8580_i0 PRJNA1137393 9096 275 1.911504 5.256636 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 464 2.7399999999999998e-126   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g8580 i0 97.091 301.225454545455 275 8 100 0 1 275 1308339 1308613 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 82837 464 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
21961441 21961441 PRJNA1137393_P_NODE_24038_length_191_cov_1.774648_g23522_i0 PRJNA1137393 24038 191 1.774648 3.38957768 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 239 1.17e-58   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g23522 i0 89.947 154.141361256545 189 13 97 6 2 187 805473 805658 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 29441 239 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;