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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA1137393" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA1137393 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1559261 1559261 PRJNA1137393_P_NODE_23242_length_193_cov_1.250000_g22726_i0 PRJNA1137393 23242 193 1.25 2.4125 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 132 2.08e-26   NTclustered gi|292559443|ref|NC_013986.1| 5778 g22726 i0 79.787 12.7461139896373 188 32 97 6 6 193 27854 28035 Hartmannella vermiformis mitochondrion, complete genome blastn 2460 132 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5387884 5387884 PRJNA1137393_P_NODE_26625_length_187_cov_1.137681_g26109_i0 PRJNA1137393 26625 187 1.137681 2.12746347 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 248 1.9e-61   NTclustered gi|470423287|ref|XM_004337534.1| 1257118 g26109 i0 90.957 1.00534759358289 188 11 99 3 3 187 1743 1927 Acanthamoeba castellanii str. Neff Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase (ACA1_164180), partial mRNA blastn 188 248 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9212665 9212665 PRJNA1137393_P_NODE_26768_length_186_cov_51.445255_g26252_i0 PRJNA1137393 26768 186 51.445255 95.6881743 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 91.6 3.37e-14   NTclustered gi|300078498|gb|GU001160.1| 5755 g26252 i0 100 17.5645161290323 49 0 26 0 1 49 5161 5209 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3267 91.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9212846 9212846 PRJNA1137393_P_NODE_75368_length_151_cov_87.470588_g74852_i0 PRJNA1137393 75368 151 87.470588 132.08058788 Protostelium mycophagum 472931 Evosea other_Eukaryota 183 4.19e-42   NTclustered gi|290886108|gb|GU477644.1| 472931 g74852 i0 96.396 8.35099337748344 111 4 74 0 41 151 864 754 Protostelium mycophagum strain HI04-85A-1b 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence blastn 1261 183 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
10488256 10488256 PRJNA1137393_P_NODE_35489_length_173_cov_41.967742_g34973_i0 PRJNA1137393 35489 173 41.967742 72.60419366 Protostelium mycophagum 472931 Evosea other_Eukaryota 298 1.69e-76   NTclustered gi|262262902|gb|FJ766445.1| 472931 g34973 i0 97.688 72.728323699422 173 4 100 0 1 173 1639 1811 Protostelium mycophagum strain KA-T02-1 small subunit ribosomal RNA gene, partial sequence blastn 12582 298 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
14313615 14313615 PRJNA1137393_P_NODE_2452_length_619_cov_18.405263_g1965_i0 PRJNA1137393 2452 619 18.405263 113.92857797 Mycamoeba gemmipara 1895019 Discosea other_Eukaryota 872 0   NTclustered gi|1060138309|gb|KX687875.1| 1895019 g1965 i0 92.135 65.8578352180937 623 39 100 7 1 619 457 1073 Mycamoeba gemmipara small subunit ribosomal RNA gene, partial sequence blastn 40766 872 1 Eukaryota Amoebozoa   Discosea Flabellinia     Mycamoeba Mycamoeba gemmipara
16861919 16861919 PRJNA1137393_P_NODE_6614_length_331_cov_16.595745_g6098_i0 PRJNA1137393 6614 331 16.595745 54.93191595 Protostelium mycophagum 472931 Evosea other_Eukaryota 411 4.459999999999999e-110   NTclustered gi|290886107|gb|GU477643.1| 472931 g6098 i0 99.123 98.8489425981873 228 2 69 0 1 228 333 106 Protostelium mycophagum strain BRNFDF05-11a-3 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence blastn 32719 411 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
19410582 19410582 PRJNA1137393_P_NODE_13156_length_232_cov_11.672131_g12640_i0 PRJNA1137393 13156 232 11.672131 27.07934392 Protostelium mycophagum 472931 Evosea other_Eukaryota 422 1.37e-113   NTclustered gi|262262901|gb|FJ766444.1| 472931 g12640 i0 99.567 43.5560344827586 231 1 99 0 1 231 1243 1473 Protostelium mycophagum strain BRNFDF05-11A-3 small subunit ribosomal RNA gene, partial sequence blastn 10105 422 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
22708999 22708999 PRJNA1137393_P_NODE_8698_length_282_cov_3.120172_g8182_i0 PRJNA1137393 8698 282 3.120172 8.79888504 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 207 5.25e-49   NTclustered gi|1772960585|gb|MN240294.1| 5756 g8182 i0 80.952 85.9964539007092 273 42 95 9 3 270 687 420 Acanthamoeba sp. voucher OSU-07-101 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial blastn 24251 209 0.990430622009569 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
24510586 24510586 PRJNA1137393_P_NODE_12220_length_239_cov_14.484211_g11704_i0 PRJNA1137393 12220 239 14.484211 34.61726429 Mycamoeba gemmipara 1895019 Discosea other_Eukaryota 414 2.38e-111   NTclustered gi|1060138309|gb|KX687875.1| 1895019 g11704 i0 97.908 73 239 5 100 0 1 239 1204 1442 Mycamoeba gemmipara small subunit ribosomal RNA gene, partial sequence blastn 17447 414 1 Eukaryota Amoebozoa   Discosea Flabellinia     Mycamoeba Mycamoeba gemmipara

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;