RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1136957" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1136957 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11763258 11763258 PRJNA1136957_S_NODE_610_length_666_cov_47.820428_g535_i0 PRJNA1136957 610 666 47.820428 318.48405048 Sycon ciliatum 27933 Porifera other_Eukaryota 250 2.19e-61   NTclustered gi|2732909594|ref|XM_065321551.1| 27933 g535 i0 80.488 3.6966966966967 328 62 49 2 1 327 593 919 PREDICTED: Sycon ciliatum uncharacterized LOC135808368 (LOC135808368), mRNA blastn 2462 250 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
13038319 13038319 PRJNA1136957_S_NODE_2491_length_445_cov_4.422280_g2394_i0 PRJNA1136957 2491 445 4.42228 19.679146 Oscarella lobularis 121494 Porifera other_Eukaryota 84.2 1.53e-11   NTclustered gi|2746750598|ref|XM_065988700.1| 121494 g2394 i0 85.185 1.05842696629213 81 12 18 0 1 81 468 548 PREDICTED: Oscarella lobularis splicing factor U2AF 35 kDa subunit-like (LOC136198688), mRNA blastn 471 84.2 1 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Oscarellidae Oscarella Oscarella lobularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;