RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1136957" and tax_phylum = "Hemichordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1136957 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2835272 2835272 PRJNA1136957_S_NODE_3923_length_386_cov_5.944954_g3826_i0 PRJNA1136957 3923 386 5.944954 22.94752244 Ptychodera flava 63121 Hemichordata other_Eukaryota 95.3 6.04e-15   NTclustered gi|2875680187|ref|XM_070724910.1| 63121 g3826 i0 81.197 1.12435233160622 117 22 30 0 11 127 609 725 PREDICTED: Ptychodera flava ER lumen protein-retaining receptor 2-like (LOC139151879), mRNA blastn 434 95.3 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
4111632 4111632 PRJNA1136957_S_NODE_2524_length_443_cov_15.083333_g2427_i0 PRJNA1136957 2524 443 15.083333 66.81916519 Ptychodera flava 63121 Hemichordata other_Eukaryota 171 1.13e-37   NTclustered gi|2875680161|ref|XM_070724896.1| 63121 g2427 i0 80.357 6.09932279909707 224 44 51 0 220 443 710 487 PREDICTED: Ptychodera flava ER lumen protein-retaining receptor 2 (LOC139151866), mRNA blastn 2702 171 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
20686015 20686015 PRJNA1136957_S_NODE_2897_length_425_cov_2.265027_g2800_i0 PRJNA1136957 2897 425 2.265027 9.62636475 Ptychodera flava 63121 Hemichordata other_Eukaryota 143 2.36e-29   NTclustered gi|2875674635|ref|XM_070722061.1| 63121 g2800 i0 79.186 16.1670588235294 221 34 51 10 1 215 409 623 PREDICTED: Ptychodera flava DNA-directed RNA polymerase II subunit RPB7 (LOC139149967), mRNA blastn 6871 143 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;