RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1136957" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 6 ✖

bioproject 1

  • PRJNA1136957 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2835270 2835270 PRJNA1136957_S_NODE_3423_length_403_cov_8.293605_g3326_i0 PRJNA1136957 3423 403 8.293605 33.42322815 Potexvirus pepini 3433856 Viruses Viruses 728 0   NTclustered gi|1674914793|gb|MK391570.1| 112229 g3326 i0 99.5 95.3126550868486 400 2 99 0 1 400 6016 6415 Pepino mosaic virus isolate PMV/DIA131, complete genome blastn 38411 728 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
5387753 5387753 PRJNA1136957_S_NODE_12205_length_246_cov_1.957219_g12108_i0 PRJNA1136957 12205 246 1.957219 4.81475874 Potexvirus pepini 3433856 Viruses Viruses 455 1.4500000000000002e-123   NTclustered gi|336288971|gb|HQ663890.1| 112229 g12108 i0 100 57.9918699186992 246 0 100 0 1 246 1699 1454 Pepino mosaic virus isolate SAR09, complete genome blastn 14266 455 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
6662457 6662457 PRJNA1136957_S_NODE_3666_length_395_cov_2.261905_g3569_i0 PRJNA1136957 3666 395 2.261905 8.93452475 Jujube closterovirus 1 3043313 Viruses Viruses 56.5 0.003   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g3569 i0 100 0.146835443037975 30 0 8 0 1 30 6 35 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
10488142 10488142 PRJNA1136957_S_NODE_19329_length_199_cov_0.871429_g19232_i0 PRJNA1136957 19329 199 0.871429 1.73414371 Red mite associated cystovirus 2936548 Viruses Viruses 237 4.44e-58   NTclustered gi|2239998150|gb|ON160022.1| 2936548 g19232 i0 92.683 0.824120603015075 164 12 82 0 35 198 841 1004 Red mite associated cystovirus isolate RMACTV1-L P14, P15, P7, P2, P4, and P1 genes, complete cds blastn 164 237 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Cystovirus Red mite associated cystovirus
11235365 11235365 PRJNA1136957_S_NODE_4589_length_366_cov_1.397394_g4492_i0 PRJNA1136957 4589 366 1.397394 5.11446204 Potexvirus 12176 Viruses Viruses 676 0   NTclustered gi|957761914|gb|KT253432.1| 112229 g4492 i0 100 90.3579234972678 366 0 100 0 1 366 529 164 Pepino mosaic virus isolate MA10 RNA-dependent RNA polymerase (RdRp) gene, partial cds blastn 33071 676 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
15587467 15587467 PRJNA1136957_S_NODE_17173_length_210_cov_2.019868_g17076_i0 PRJNA1136957 17173 210 2.019868 4.2417228 Pseudomonas phage ER16 2917704 Viruses Viruses 193 1.04e-44   NTclustered gi|2209092829|gb|OM650250.1| 2917704 g17076 i0 83.333 1 210 34 100 1 1 210 967 1175 Pseudomonas phage ER16 segment S, complete sequence blastn 210 193 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae   Pseudomonas phage ER16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;