RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1136957" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1136957 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2835264 2835264 PRJNA1136957_S_NODE_21463_length_187_cov_3.570312_g21366_i0 PRJNA1136957 21463 187 3.570312 6.67648344 Chloroidium ellipsoideum 63676 Plants Plants 224 3.21e-54   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g21366 i0 88.235 99.8395721925134 187 22 100 0 1 187 2338 2524 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 18670 224 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
4860068 4860068 PRJNA1136957_S_NODE_14004_length_231_cov_1.284884_g13907_i0 PRJNA1136957 14004 231 1.284884 2.96808204 Ostreobium 121087 Plants Plants 58.4 4.44e-4   NTclustered gi|1075059554|ref|NC_030629.1| 121088 g13907 i0 97.143 0.303030303030303 35 0 15 1 94 128 61550 61583 Ostreobium quekettii genome assembly, organelle: plastid blastn 70 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
20685965 20685965 PRJNA1136957_S_NODE_13617_length_234_cov_1.531429_g13520_i0 PRJNA1136957 13617 234 1.531429 3.58354386 Diplosphaera sundellii 3135960 Plants Plants 202 1.9699999999999998e-47   NTclustered gi|2878821371|gb|PQ563290.1| 3135960 g13520 i0 89.873 44.042735042735 158 15 97 1 1 157 9287 9130 Diplosphaera sundellii mitochondrion, complete genome blastn 10306 202 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera sundellii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;