RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1136957" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1136957 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6662480 6662480 PRJNA1136957_S_NODE_8766_length_285_cov_2.159292_g8669_i0 PRJNA1136957 8766 285 2.159292 6.1539822 Opitutus sp. GAS368 1882749 Bacteria Bacteria 490 4.71e-134   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g8669 i0 97.88 132.421052631579 283 6 99 0 3 285 2834660 2834942 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 37740 490 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
7937592 7937592 PRJNA1136957_S_NODE_11847_length_249_cov_2.247368_g11750_i0 PRJNA1136957 11847 249 2.247368 5.59594632 Actomonas aquatica 2866162 Bacteria Bacteria 52.8 0.023   NTclustered gi|2647674565|gb|CP139781.1| 2866162 g11750 i0 100 0.112449799196787 28 0 11 0 222 249 11647 11674 Actomonas aquatica strain WL0086 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Actomonas Actomonas aquatica
14313493 14313493 PRJNA1136957_S_NODE_11852_length_249_cov_2.021053_g11755_i0 PRJNA1136957 11852 249 2.021053 5.03242197 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 337 5.559999999999998e-88   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g11755 i0 91.129 91.1967871485944 248 22 99 0 1 248 1874047 1873800 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 22708 337 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;