RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1136505" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1136505 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1559092 1559092 PRJNA1136505_P_NODE_28462_length_745_cov_4.065476_g21793_i0 PRJNA1136505 28462 745 4.065476 30.2877962 Pristionchus microcercus 3308705 Nematoda Nematoda 442 3.789999999999999e-119   NTclustered gi|675118833|gb|KJ877296.1| 3308705 g21793 i0 78.016 97.4093959731544 746 134 98 27 10 740 731 1 Paroigolaimella micrura large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 72570 442 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus microcercus
18136180 18136180 PRJNA1136505_P_NODE_123335_length_259_cov_1.188172_g116475_i0 PRJNA1136505 123335 259 1.188172 3.07736548 Strongyloides ratti 34506 Nematoda Nematoda 174 4.83e-39   NTclustered gi|1376148385|ref|XM_024654896.1| 34506 g116475 i0 79.167 66.4633204633205 264 45 100 8 1 259 742 1000 Strongyloides ratti Phosphate carrier protein, mitochondrial (SRAE_2000367400), partial mRNA blastn 17214 174 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
24510453 24510453 PRJNA1136505_P_NODE_153820_length_241_cov_1.833333_g146960_i0 PRJNA1136505 153820 241 1.833333 4.41833253 Strongyloides papillosus 174720 Nematoda Nematoda 255 1.54e-63   NTclustered gi|687022646|emb|LM525560.1| 174720 g146960 i0 86.638 91.6265560165975 232 30 96 1 1 232 864975 865205 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000001 blastn 22082 255 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;