RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1136505" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1136505 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4860045 4860045 PRJNA1136505_P_NODE_34424_length_611_cov_1.933086_g27620_i0 PRJNA1136505 34424 611 1.933086 11.81115546 Corallococcus 83461 Bacteria Bacteria 407 1.12e-108   NTclustered gi|2851136330|gb|CP172866.1| 184914 g27620 i0 83.073 64.9181669394435 449 74 73 2 126 573 8995006 8994559 Corallococcus coralloides strain KYC2213 chromosome, complete genome blastn 39665 407 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides
10488061 10488061 PRJNA1136505_P_NODE_26049_length_823_cov_2.624000_g19519_i0 PRJNA1136505 26049 823 2.624 21.59552 Polyangium aurulentum 2567896 Bacteria Bacteria 835 0   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g19519 i0 85.064 151.234507897934 857 87 100 28 1 823 443880 444729 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 124466 835 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
18883543 18883543 PRJNA1136505_P_NODE_36555_length_577_cov_1.527778_g29731_i0 PRJNA1136505 36555 577 1.527778 8.81527906 Myxococcia 32015 Bacteria Bacteria 647 0   NTclustered gi|908353314|gb|CP012159.1| 52 g29731 i0 86.942 128.336221837088 582 68 99 7 3 577 1430684 1431264 Chondromyces crocatus strain Cm c5, complete genome blastn 74050 651 0.993855606758833 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
21961244 21961244 PRJNA1136505_P_NODE_139738_length_247_cov_0.885057_g132878_i0 PRJNA1136505 139738 247 0.885057 2.18609079 Labilithrix luteola 1391654 Bacteria Bacteria 375 1.1699999999999999e-99   NTclustered gi|913610804|gb|CP012333.1| 1391654 g132878 i0 94.628 135.417004048583 242 13 98 0 3 244 3942986 3943227 Labilithrix luteola strain DSM 27648, complete genome blastn 33448 375 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;