RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1136505" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1136505 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9212517 9212517 PRJNA1136505_P_NODE_35608_length_591_cov_2.808880_g28791_i0 PRJNA1136505 35608 591 2.80888 16.6004808 Heterostelium album 2086695 Evosea other_Eukaryota 344 8.61e-90   NTclustered gi|1160575900|ref|XM_020582690.1| 670386 g28791 i0 79.352 58.5651438240271 494 98 83 4 59 550 504 13 Polysphondylium pallidum PN500 Rab GTPase (rab7A), partial mRNA blastn 34612 344 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
10488055 10488055 PRJNA1136505_P_NODE_158749_length_225_cov_4.309211_g151889_i0 PRJNA1136505 158749 225 4.309211 9.69572475 Cavenderia fasciculata 261658 Evosea other_Eukaryota 241 3.9800000000000004e-59   NTclustered gi|470266101|ref|XM_004361626.1| 261658 g151889 i0 87.5 82.4311111111111 208 26 92 0 1 208 208 1 Cavenderia fasciculata uncharacterized protein (DFA_05968), partial mRNA blastn 18547 241 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
15587401 15587401 PRJNA1136505_P_NODE_31153_length_676_cov_3.019900_g24400_i0 PRJNA1136505 31153 676 3.0199 20.414524 Acytostelium subglobosum 361139 Evosea other_Eukaryota 486 1.5599999999999998e-132   NTclustered gi|831757464|ref|XM_012893584.1| 1410327 g24400 i0 84.413 71.0502958579882 494 77 73 0 183 676 512 19 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 48030 486 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
20685938 20685938 PRJNA1136505_P_NODE_82217_length_322_cov_0.919679_g75357_i0 PRJNA1136505 82217 322 0.919679 2.96136638 Acytostelium subglobosum 361139 Evosea other_Eukaryota 235 2.8e-57   NTclustered gi|831768659|ref|XM_012897017.1| 1410327 g75357 i0 87.019 1.96894409937888 208 27 65 0 94 301 608 815 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 634 235 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;