RNAquarium Metadata Server
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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA1136505" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA1136505 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
284467 284467 PRJNA1136505_P_NODE_133081_length_250_cov_0.870056_g126221_i0 PRJNA1136505 133081 250 0.870056 2.17514 Vannella simplex 197532 Discosea other_Eukaryota 462 8.83e-126   NTclustered gi|861554667|gb|KP719197.1| 197532 g126221 i0 100 97.564 250 0 100 0 1 250 504 255 Vannella simplex strain A17WVB small subunit ribosomal RNA gene, partial sequence blastn 24391 462 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
284501 284501 PRJNA1136505_P_NODE_16241_length_1491_cov_2.507757_g11328_i0 PRJNA1136505 16241 1491 2.507757 37.39065687 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 795 0   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g11328 i0 80.633 63.5808182427901 1043 189 70 8 454 1491 2499 1465 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 94799 795 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1559051 1559051 PRJNA1136505_P_NODE_125162_length_256_cov_2.092896_g118302_i0 PRJNA1136505 125162 256 2.092896 5.35781376 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 122 1.75e-23   NTclustered gi|155626|gb|M30780.1|ACAMYOIHC 5755 g118302 i0 85.47 1.05078125 117 17 46 0 19 135 3275 3159 A.castellanii myosin I heavy chain (MIL) gene, complete cds blastn 269 122 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2835194 2835194 PRJNA1136505_P_NODE_50143_length_442_cov_2.224932_g43284_i0 PRJNA1136505 50143 442 2.224932 9.83419944 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 377 6.21e-100   NTclustered gi|470422367|ref|XM_004337444.1| 1257118 g43284 i0 82.599 46.5067873303167 431 71 97 4 1 429 1065 637 Acanthamoeba castellanii str. Neff 26S protease regulatory subunit 6a, putative (ACA1_341090), partial mRNA blastn 20556 377 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4111531 4111531 PRJNA1136505_P_NODE_52284_length_428_cov_4.250704_g45425_i0 PRJNA1136505 52284 428 4.250704 18.19301312 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 255 2.93e-63   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g45425 i0 83.333 31.5023364485981 288 36 66 10 116 397 317 36 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 13483 255 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6662350 6662350 PRJNA1136505_P_NODE_23726_length_923_cov_1.689412_g17387_i0 PRJNA1136505 23726 923 1.689412 15.59327276 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 540 1.63e-148   NTclustered gi|470510585|ref|XM_004351497.1| 1257118 g17387 i0 77.972 61.0260021668472 917 165 98 30 16 915 1185 289 Acanthamoeba castellanii str. Neff transport protein Sec61 alpha subunit, putative (ACA1_149400), partial mRNA blastn 56327 540 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6662359 6662359 PRJNA1136505_P_NODE_43246_length_497_cov_1.634434_g36388_i0 PRJNA1136505 43246 497 1.634434 8.12313698 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 359 2.55e-94   NTclustered gi|470525918|ref|XM_004356620.1| 1257118 g36388 i0 79.92 7.77062374245473 498 92 99 8 3 496 632 139 Acanthamoeba castellanii str. Neff actinrelated protein 2 isoform 4, putative (ACA1_174340), partial mRNA blastn 3862 359 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7937549 7937549 PRJNA1136505_P_NODE_27087_length_787_cov_1.606443_g20494_i0 PRJNA1136505 27087 787 1.606443 12.64270641 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 532 2.31e-146   NTclustered gi|88601115|gb|DQ390344.1| 5755 g20494 i0 87.582 0.583227445997459 459 57 58 0 103 561 459 1 Acanthamoeba castellanii prismane cluster-containing protein mRNA, partial cds blastn 459 532 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9212526 9212526 PRJNA1136505_P_NODE_58288_length_397_cov_0.950617_g51428_i0 PRJNA1136505 58288 397 0.950617 3.77394949 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 150 1.3099999999999998e-31   NTclustered gi|470487724|ref|XM_004344675.1| 1257118 g51428 i0 83.234 0.420654911838791 167 24 42 4 21 185 1158 994 Acanthamoeba castellanii str. Neff hydrogenase assembly factor, putative (ACA1_279740), partial mRNA blastn 167 150 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13785349 13785349 PRJNA1136505_P_NODE_149531_length_243_cov_0.905882_g142671_i0 PRJNA1136505 149531 243 0.905882 2.20129326 Acanthamoeba 5754 Discosea other_Eukaryota 283 7.14e-72   NTclustered gi|881634|gb|U29610.1|ACU29610 5755 g142671 i0 91.304 52.5637860082305 207 18 85 0 8 214 508 302 Acanthaoeba castellanii actin-related protein 3 Arp3 mRNA, complete cds blastn 12773 283 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14313450 14313450 PRJNA1136505_P_NODE_41192_length_519_cov_1.430493_g34342_i0 PRJNA1136505 41192 519 1.430493 7.42425867 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 322 3.51e-83   NTclustered gi|470456539|ref|XM_004341020.1| 1257118 g34342 i0 79.022 13.9942196531792 491 87 93 15 36 518 594 112 Acanthamoeba castellanii str. Neff polyadenylate-binding protein family protein (ACA1_234620), partial mRNA blastn 7263 322 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19410374 19410374 PRJNA1136505_P_NODE_131356_length_251_cov_0.865169_g124496_i0 PRJNA1136505 131356 251 0.865169 2.17157419 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 255 1.62e-63   NTclustered gi|470484649|ref|XM_004344039.1| 1257118 g124496 i0 86.008 47.2270916334661 243 28 96 6 1 240 2684 2923 Acanthamoeba castellanii str. Neff PremRNA processing splicing factor 8, putative (ACA1_054320), partial mRNA blastn 11854 255 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20685866 20685866 PRJNA1136505_P_NODE_124917_length_257_cov_1.206522_g118057_i0 PRJNA1136505 124917 257 1.206522 3.10076154 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 215 2.82e-51   NTclustered gi|470388404|ref|XM_004334335.1| 1257118 g118057 i0 81.923 95.2490272373541 260 41 100 5 1 257 201 457 Acanthamoeba castellanii str. Neff heat shock protein ssa1, putative (ACA1_374380), partial mRNA blastn 24479 215 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23236823 23236823 PRJNA1136505_P_NODE_40379_length_528_cov_1.448352_g33534_i0 PRJNA1136505 40379 528 1.448352 7.64729856 Paramoeba perurans 437603 Discosea other_Eukaryota 211 8.08e-50   NTclustered gi|2635491373|gb|OR923386.1| 437603 g33534 i0 75.676 6.8655303030303 481 86 90 22 6 481 959 505 Paramoeba perurans clone PPER_00013037 heat shock 90 mRNA, complete cds blastn 3625 211 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
24510433 24510433 PRJNA1136505_P_NODE_139080_length_247_cov_1.678161_g132220_i0 PRJNA1136505 139080 247 1.678161 4.14505767 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 233 7.429999999999999e-57   NTclustered gi|470506926|ref|XM_004367500.1| 1257118 g132220 i0 86.111 63.1862348178138 216 30 87 0 4 219 927 712 Acanthamoeba castellanii str. Neff isovaleryl Coenzyme A dehydrogenase (ACA1_252460), partial mRNA blastn 15607 233 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24510478 24510478 PRJNA1136505_P_NODE_62960_length_377_cov_2.430921_g56100_i0 PRJNA1136505 62960 377 2.430921 9.16457217 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 231 4.299999999999999e-56   NTclustered gi|470506063|ref|XM_004348651.1| 1257118 g56100 i0 82.51 12.1140583554377 263 46 70 0 23 285 263 1 Acanthamoeba castellanii str. Neff Ras family protein (ACA1_126680), partial mRNA blastn 4567 231 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;