RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1136505" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1136505 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
284502 284502 PRJNA1136505_P_NODE_17881_length_1331_cov_3.024642_g12526_i0 PRJNA1136505 17881 1331 3.024642 40.25798502 Polychytrium aggregatum 110093 Fungi Fungi 675 0   NTclustered gi|2432171462|ref|XM_053112561.1| 110093 g12526 i0 77.386 86.8647633358377 1163 245 87 15 4 1157 987 2140 Polychytrium aggregatum heat shock protein 90 kDa (BJ171DRAFT_524257), mRNA blastn 115617 675 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
7937546 7937546 PRJNA1136505_P_NODE_21707_length_1032_cov_13.604797_g15628_i0 PRJNA1136505 21707 1032 13.604797 140.40150504 Spizellomyces punctatus 109760 Fungi Fungi 638 6.319999999999998e-178   NTclustered gi|1027028346|ref|XM_016756817.1| 645134 g15628 i0 79.688 81.8430232558139 896 173 86 8 45 936 1253 2143 Spizellomyces punctatus DAOM BR117 ADP,ATP carrier protein 1, mitochondrial, variant (SPPG_08669), partial mRNA blastn 84462 638 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
20685851 20685851 PRJNA1136505_P_NODE_111197_length_274_cov_1.064677_g104337_i0 PRJNA1136505 111197 274 1.064677 2.91721498 Synchytrium microbalum 1806994 Fungi Fungi 252 2.31e-62   NTclustered gi|1759161090|ref|XM_031170872.1| 1806994 g104337 i0 83.824 43.543795620438 272 36 98 7 7 274 736 1003 Synchytrium microbalum succinate dehydrogenase (SmJEL517_g04944), partial mRNA blastn 11931 252 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
20685913 20685913 PRJNA1136505_P_NODE_28397_length_747_cov_3.281899_g21731_i0 PRJNA1136505 28397 747 3.281899 24.51578553 Polychytrium aggregatum 110093 Fungi Fungi 344 1.0999999999999999e-89   NTclustered gi|2432170888|ref|XM_053112523.1| 110093 g21731 i0 78.189 30.7269076305221 541 116 72 2 13 552 51 590 Polychytrium aggregatum putative 40S ribosomal protein S3 (BJ171DRAFT_522887), mRNA blastn 22953 344 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;