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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1136505" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA1136505 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2835138 2835138 PRJNA1136505_P_NODE_122123_length_260_cov_1.625668_g115263_i0 PRJNA1136505 122123 260 1.625668 4.2267368 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 361 3.469999999999999e-95   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g115263 i0 92.188 221.05 256 18 98 2 1 254 2002593 2002848 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 57473 361 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
2835157 2835157 PRJNA1136505_P_NODE_141003_length_247_cov_0.885057_g134143_i0 PRJNA1136505 141003 247 0.885057 2.18609079 Gemmataceae bacterium 2052164 Bacteria Bacteria 143 1.29e-29   NTclustered gi|2063814025|emb|LR586051.1| 2052164 g134143 i0 94.624 7.11740890688259 93 4 38 1 46 138 4154675 4154584 Gemmata bacterium CJuql4 whole genome assembly and annotation blastn 1758 143 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
4111546 4111546 PRJNA1136505_P_NODE_80724_length_325_cov_1.222222_g73864_i0 PRJNA1136505 80724 325 1.222222 3.9722215 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 357 5.78e-94   NTclustered gi|226525339|gb|FJ872375.1| 156588 g73864 i0 86.544 302.307692307692 327 40 100 4 1 325 27373 27049 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 98250 357 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
12510732 12510732 PRJNA1136505_P_NODE_66070_length_366_cov_1.389078_g59210_i0 PRJNA1136505 66070 366 1.389078 5.08402548 Gemmata 113 Bacteria Bacteria 593 4.599999999999998e-165   NTclustered gi|307591227|gb|GQ889438.1| 886811 g59210 i0 95.902 99.3770491803279 366 15 100 0 1 366 849 484 Gemmata sp. Io3-3 16S ribosomal RNA gene, partial sequence blastn 36372 593 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata sp. Io3-3
14313471 14313471 PRJNA1136505_P_NODE_81172_length_324_cov_1.203187_g74312_i0 PRJNA1136505 81172 324 1.203187 3.89832588 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 268 2.7799999999999998e-67   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g74312 i0 92.973 77.6851851851852 185 11 57 2 141 324 2003008 2002825 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 25170 268 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
20158428 20158428 PRJNA1136505_P_NODE_75176_length_338_cov_2.524528_g68316_i0 PRJNA1136505 75176 338 2.524528 8.53290464 Gemmata 113 Bacteria Bacteria 475 1.5999999999999995e-129   NTclustered gi|12583965|gb|AF245369.1|AF245369 114 g68316 i0 92.059 160.872781065089 340 24 100 3 1 338 2029 2367 Gemmata obscuriglobus 23S ribosomal RNA gene, partial sequence blastn 54375 475 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;