RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1136505" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA1136505 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7937579 7937579 PRJNA1136505_P_NODE_98887_length_290_cov_1.115207_g92027_i0 PRJNA1136505 98887 290 1.115207 3.2341003 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 154 7.160000000000001e-33   NTclustered gi|551628172|ref|XM_005794010.1| 280463 g92027 i0 77.992 4.16206896551724 259 47 88 8 8 261 266 13 Emiliania huxleyi CCMP1516 proteasome subunit alpha type partial mRNA blastn 1207 154 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
20685902 20685902 PRJNA1136505_P_NODE_154257_length_241_cov_1.375000_g147397_i0 PRJNA1136505 154257 241 1.375 3.31375 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 220 5.62e-53   NTclustered gi|551614578|ref|XM_005788150.1| 280463 g147397 i0 83.333 1.99585062240664 240 38 99 2 1 239 4127 3889 Emiliania huxleyi CCMP1516 acetyl-CoA carboxylase (ACC-2), mRNA blastn 481 220 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;