RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1136505" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1136505 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7937563 7937563 PRJNA1136505_P_NODE_67387_length_361_cov_2.079861_g60527_i0 PRJNA1136505 67387 361 2.079861 7.50829821 Seculamonas ecuadoriensis 221724 Root_unresolved Root_unresolved 226 1.91e-54   NTclustered gi|2443276671|gb|OP760420.1| 221724 g60527 i0 80.128 17.6454293628809 312 54 85 7 47 354 1184 877 Seculamonas ecuadoriensis H/ACA ribonucleoprotein complex subunit mRNA, partial cds blastn 6370 226 1 Eukaryota Discoba       Jakobida   Seculamonas Seculamonas ecuadoriensis
12510730 12510730 PRJNA1136505_P_NODE_63370_length_376_cov_1.145215_g56510_i0 PRJNA1136505 63370 376 1.145215 4.3060084 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 239 2.5600000000000003e-58   NTclustered gi|290977743|ref|XM_002671551.1| 5762 g56510 i0 81.293 31.2101063829787 294 55 78 0 1 294 1058 1351 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_59416), mRNA blastn 11735 239 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13785363 13785363 PRJNA1136505_P_NODE_70691_length_351_cov_1.107914_g63831_i0 PRJNA1136505 70691 351 1.107914 3.88877814 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 375 1.7299999999999998e-99   NTclustered gi|290989871|ref|XM_002677515.1| 5762 g63831 i0 86.416 100.022792022792 346 43 98 4 8 351 486 143 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_56150), mRNA blastn 35108 377 0.994694960212202 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;