RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1134759" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1134759 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3582389 3582389 PRJNA1134759_P_NODE_38203_length_278_cov_1.721951_g38027_i0 PRJNA1134759 38203 278 1.721951 4.78702378 Bovidae 9895 Chordata Chordata 446 9.999999999999998e-121   NTclustered gi|42433177|gb|AY517903.1| 9901 g38027 i0 99.59 76.0143884892086 244 1 100 0 35 278 285 42 Bison bison isolate bison_c satellite 1.709 sequence blastn 21132 446 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bison Bison bison
4111159 4111159 PRJNA1134759_P_NODE_33224_length_294_cov_1.402715_g33048_i0 PRJNA1134759 33224 294 1.402715 4.1239821 Scyliorhinus canicula 7830 Chordata Chordata 52.8 0.027   NTclustered gi|1952530154|ref|XM_038796138.1| 7830 g33048 i0 96.774 0.105442176870748 31 1 11 0 119 149 1166 1196 PREDICTED: Scyliorhinus canicula POU class 4 homeobox 3 (pou4f3), mRNA blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
6661938 6661938 PRJNA1134759_P_NODE_14806_length_413_cov_4.044118_g14630_i0 PRJNA1134759 14806 413 4.044118 16.70220734 Polypterus senegalus 55291 Chordata Chordata 353 9.72e-93   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g14630 i0 83.333 13.1670702179177 402 48 96 11 2 397 1063 1451 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 5438 353 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
7937088 7937088 PRJNA1134759_P_NODE_11287_length_466_cov_4.058524_g11111_i0 PRJNA1134759 11287 466 4.058524 18.91272184 Polypterus senegalus 55291 Chordata Chordata 327 6.72e-85   NTclustered gi|1993892376|ref|XM_039743353.1| 55291 g11111 i0 80.667 12.8884120171674 450 64 93 20 34 466 495 938 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120522331), mRNA blastn 6006 327 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
13037903 13037903 PRJNA1134759_P_NODE_54211_length_245_cov_0.906977_g54035_i0 PRJNA1134759 54211 245 0.906977 2.22209365 Phocoena sinus 42100 Chordata Chordata 135 2.13e-27   NTclustered gi|1814449161|ref|XR_004352779.1| 42100 g54035 i0 90.385 36.2204081632653 104 9 42 1 45 148 658 760 PREDICTED: Phocoena sinus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3GNT2), transcript variant X18, misc_RNA blastn 8874 135 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Phocoenidae Phocoena Phocoena sinus
16334316 16334316 PRJNA1134759_P_NODE_52833_length_247_cov_0.896552_g52657_i0 PRJNA1134759 52833 247 0.896552 2.21448344 Petromyzontidae 7746 Chordata Chordata 52.8 0.022   NTclustered gi|2815004610|emb|OZ078629.2| 7748 g52657 i0 100 0.906882591093117 28 0 11 0 184 211 3049329 3049356 Lampetra fluviatilis genome assembly, chromosome: 61 blastn 224 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
20685590 20685590 PRJNA1134759_P_NODE_52917_length_247_cov_0.896552_g52741_i0 PRJNA1134759 52917 247 0.896552 2.21448344 Bos taurus 9913 Chordata Chordata 228 3.4599999999999984e-55   NTclustered gi|2587918737|tpg|BK064707.1| 9913 g52741 i0 96.377 261.87044534413 138 5 80 0 1 138 2722561 2722698 TPA: Bos taurus breed Hereford TRA/TRD locus blastn 64682 228 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;