RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1134759" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1134759 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2834810 2834810 PRJNA1134759_P_NODE_36163_length_284_cov_1.872038_g35987_i0 PRJNA1134759 36163 284 1.872038 5.31658792 Caloramator sp. mosi_1 3023090 Bacteria Bacteria 231 3.14e-56   NTclustered gi|2444358925|gb|CP117677.1| 3023090 g35987 i0 81.72 3.42605633802817 279 49 98 2 7 284 878331 878054 Caloramator sp. mosi_1 chromosome, complete genome blastn 973 231 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Caloramator Caloramator sp. mosi_1
6134733 6134733 PRJNA1134759_P_NODE_56525_length_242_cov_0.923077_g56349_i0 PRJNA1134759 56525 242 0.923077 2.23384634 Streptococcus 1301 Bacteria Bacteria 420 5.19e-113   NTclustered gi|1239731491|gb|CP017064.1| 1308 g56349 i0 97.934 100 242 5 100 0 1 242 1415074 1415315 Streptococcus thermophilus strain ST3 chromosome, complete genome blastn 24200 420 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus
14313123 14313123 PRJNA1134759_P_NODE_51552_length_249_cov_0.886364_g51376_i0 PRJNA1134759 51552 249 0.886364 2.20704636 Staphylococcus epidermidis 1282 Bacteria Bacteria 460 3.16e-125   NTclustered gi|1176884116|gb|CP020463.1| 1282 g51376 i0 100 100 249 0 100 0 1 249 556630 556382 Staphylococcus epidermidis strain 1457 chromosome, complete genome blastn 24900 460 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
19410101 19410101 PRJNA1134759_P_NODE_51536_length_249_cov_0.886364_g51360_i0 PRJNA1134759 51536 249 0.886364 2.20704636 Cytobacillus firmus 1399 Bacteria Bacteria 231 2.7e-56   NTclustered gi|2511383467|gb|CP126108.1| 1399 g51360 i0 83.468 76.9357429718875 248 41 99 0 1 248 110336 110583 Cytobacillus firmus strain SQ11 chromosome, complete genome blastn 19157 231 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Cytobacillus Cytobacillus firmus
20685598 20685598 PRJNA1134759_P_NODE_54977_length_244_cov_0.912281_g54801_i0 PRJNA1134759 54977 244 0.912281 2.22596564 Lactobacillus crispatus 47770 Bacteria Bacteria 451 1.86e-122   NTclustered gi|2096299657|gb|CP083392.1| 47770 g54801 i0 100 30 244 0 100 0 1 244 1268306 1268063 Lactobacillus crispatus strain Lc1226 chromosome, complete genome blastn 7320 451 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus
25258195 25258195 PRJNA1134759_P_NODE_27180_length_319_cov_1.585366_g27004_i0 PRJNA1134759 27180 319 1.585366 5.05731754 Clostridium 1485 Bacteria Bacteria 239 2.14e-58   NTclustered gi|1943187032|gb|CP065677.1| 1502 g27004 i0 80.495 66.3134796238244 323 53 99 8 2 319 694276 694593 Clostridium perfringens strain FDAARGOS_904 chromosome, complete genome blastn 21154 239 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;