RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1132896" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1132896 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2307100 2307100 PRJNA1132896_P_NODE_2942_length_325_cov_1.218254_g2851_i0 PRJNA1132896 2942 325 1.218254 3.9593255 Citrifermentans 2883512 Bacteria Bacteria 451 2.5800000000000003e-122   NTclustered gi|470483506|ref|NR_076596.1| 225194 g2851 i0 91.692 315.966153846154 325 27 100 0 1 325 512 188 Geobacter bemidjiensis strain Bem 23S ribosomal RNA gene, complete sequence blastn 102689 451 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Citrifermentans Citrifermentans bemidjiense
22708630 22708630 PRJNA1132896_P_NODE_7478_length_249_cov_0.875000_g7387_i0 PRJNA1132896 7478 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 198 2.74e-46   NTclustered gi|749207097|gb|CP010311.1| 483547 g7387 i0 81.452 206.827309236948 248 41 98 5 1 245 2608654 2608899 Geoalkalibacter subterraneus strain Red1, complete genome blastn 51500 198 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter subterraneus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;