RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1132896" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1132896 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11235108 11235108 PRJNA1132896_P_NODE_1809_length_399_cov_1.855828_g1718_i0 PRJNA1132896 1809 399 1.855828 7.40475372 Gracilinema 2951106 Bacteria Bacteria 721 0   NTclustered gi|470488994|ref|NR_076899.1| 215591 g1718 i0 99.248 190.593984962406 399 3 100 0 1 399 1064 666 Treponema caldarium strain H1 23S ribosomal RNA, complete sequence blastn 76047 721 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Breznakiellaceae Gracilinema Gracilinema caldarium
21433650 21433650 PRJNA1132896_P_NODE_2077_length_376_cov_1.016502_g1986_i0 PRJNA1132896 2077 376 1.016502 3.82204752 Gracilinema 2951106 Bacteria Bacteria 606 6.089999999999998e-169   NTclustered gi|470488994|ref|NR_076899.1| 215591 g1986 i0 95.756 193.412234042553 377 15 100 1 1 376 638 262 Treponema caldarium strain H1 23S ribosomal RNA, complete sequence blastn 72723 606 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Breznakiellaceae Gracilinema Gracilinema caldarium
25258102 25258102 PRJNA1132896_P_NODE_9340_length_244_cov_0.894737_g9249_i0 PRJNA1132896 9340 244 0.894737 2.18315828 Gracilinema 2951106 Bacteria Bacteria 313 9.139999999999999e-81   NTclustered gi|470488994|ref|NR_076899.1| 215591 g9249 i0 90.083 57.3606557377049 242 23 99 1 1 241 360 119 Treponema caldarium strain H1 23S ribosomal RNA, complete sequence blastn 13996 313 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Breznakiellaceae Gracilinema Gracilinema caldarium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;