RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1132896" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1132896 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11762209 11762209 PRJNA1132896_P_NODE_1390_length_446_cov_1.364611_g1299_i0 PRJNA1132896 1390 446 1.364611 6.08616506 Polyangium aurulentum 2567896 Bacteria Bacteria 641 2.0099999999999993e-179   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g1299 i0 92.793 186.143497757848 444 31 99 1 1 444 442631 442189 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 83020 641 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
20685057 20685057 PRJNA1132896_P_NODE_9417_length_243_cov_1.358824_g9326_i0 PRJNA1132896 9417 243 1.358824 3.30194232 Chondromyces crocatus 52 Bacteria Bacteria 351 1.93e-92   NTclustered gi|169977285|emb|AM946600.1| 52 g9326 i0 93.966 136.493827160494 232 14 95 0 1 232 2173 1942 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 33168 351 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
21433664 21433664 PRJNA1132896_P_NODE_5517_length_267_cov_1.587629_g5426_i0 PRJNA1132896 5517 267 1.587629 4.23896943 Pendulispora 3375062 Bacteria Bacteria 361 3.57e-95   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g5426 i0 91.386 145.985018726592 267 18 99 3 2 267 7191391 7191653 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 38978 363 0.994490358126722 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;