RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1132896" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1132896 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7936619 7936619 PRJNA1132896_P_NODE_1827_length_397_cov_1.157407_g1736_i0 PRJNA1132896 1827 397 1.157407 4.59490579 Mizuhopecten yessoensis 6573 Mollusca Mollusca 52.8 0.038   NTclustered gi|1207926146|ref|XM_021496519.1| 6573 g1736 i0 100 0.0705289672544081 28 0 7 0 142 169 95 122 PREDICTED: Mizuhopecten yessoensis igLON family member 5-like (LOC110449569), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
11762224 11762224 PRJNA1132896_P_NODE_3970_length_289_cov_1.425926_g3879_i0 PRJNA1132896 3970 289 1.425926 4.12092614 Bradybaena similaris 145626 Mollusca Mollusca 69.4 2.66e-7   NTclustered gi|2912992646|dbj|AP039597.1| 145626 g3879 i0 91.837 577.719723183391 49 4 36 0 73 121 21146108 21146060 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 16, sequence blastn 166961 69.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
15586508 15586508 PRJNA1132896_P_NODE_10633_length_228_cov_2.522581_g10542_i0 PRJNA1132896 10633 228 2.522581 5.75148468 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.02   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g10542 i0 100 0.12280701754386 28 0 12 0 118 145 8953149 8953122 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
23235911 23235911 PRJNA1132896_P_NODE_10439_length_238_cov_2.521212_g10348_i0 PRJNA1132896 10439 238 2.521212 6.00048456 Bradybaena similaris 145626 Mollusca Mollusca 62.1 3.55e-5   NTclustered gi|2912991694|dbj|AP039596.1| 145626 g10348 i0 97.297 3.86554621848739 37 0 15 1 185 220 27621817 27621853 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 15, sequence blastn 920 62.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;