RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1132896" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1132896 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1558204 1558204 PRJNA1132896_P_NODE_3182_length_315_cov_1.272727_g3091_i0 PRJNA1132896 3182 315 1.272727 4.00909005 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 130 1.32e-25   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g3091 i0 87.611 31.7460317460317 113 13 36 1 9 120 219 107 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 10000 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2834331 2834331 PRJNA1132896_P_NODE_863_length_554_cov_44.110187_g772_i0 PRJNA1132896 863 554 44.110187 244.37043598 Vannella sp. strain CAZ6/I 325077 Discosea other_Eukaryota 931 0   NTclustered gi|62865939|gb|AY929914.1| 325077 g772 i0 97.107 101.675090252708 553 15 99 1 2 554 1091 540 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 56328 931 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I
16860795 16860795 PRJNA1132896_P_NODE_2114_length_373_cov_1.903333_g2023_i0 PRJNA1132896 2114 373 1.903333 7.09943209 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 303 8.87e-78   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g2023 i0 82.123 20.8525469168901 358 60 95 4 1 356 2117 1762 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 7778 303 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16860796 16860796 PRJNA1132896_P_NODE_214_length_1114_cov_21.984630_g160_i0 PRJNA1132896 214 1114 21.98463 244.9087782 Vannella sp. strain CAZ6/I 325077 Discosea other_Eukaryota 926 0   NTclustered gi|62865939|gb|AY929914.1| 325077 g160 i0 96.931 49.9174147217235 554 13 49 3 563 1113 3 555 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 55608 926 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I
19409514 19409514 PRJNA1132896_P_NODE_3676_length_296_cov_2.932735_g3585_i0 PRJNA1132896 3676 296 2.932735 8.6808956 Vannella septentrionalis 197531 Discosea other_Eukaryota 388 1.84e-103   NTclustered gi|300078499|gb|GU001161.1| 197531 g3585 i0 90.429 66.4560810810811 303 17 99 10 3 296 3492 3791 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19671 388 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
21960381 21960381 PRJNA1132896_P_NODE_1538_length_427_cov_3.104520_g1447_i0 PRJNA1132896 1538 427 3.10452 13.2563004 Platyamoeba placida 3454475 Discosea other_Eukaryota 472 2.67e-128   NTclustered gi|33946348|gb|AY294153.1| 197527 g1447 i0 90.476 85.2693208430913 357 34 84 0 69 425 538 894 Platyamoeba placida actin mRNA, partial cds blastn 36410 472 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
21960463 21960463 PRJNA1132896_P_NODE_938_length_533_cov_43.550000_g847_i0 PRJNA1132896 938 533 43.55 232.1215 Ripella decalvata 2047822 Discosea other_Eukaryota 835 0   NTclustered gi|1269228425|gb|MF683550.1| 2047822 g847 i0 95.31 100.373358348968 533 13 99 11 1 529 1133 1657 Ripella decalvata clone 26.2.4 18S ribosomal RNA gene, partial sequence blastn 53499 835 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;