RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1132896" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1132896 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5386824 5386824 PRJNA1132896_P_NODE_3725_length_295_cov_1.040541_g3634_i0 PRJNA1132896 3725 295 1.040541 3.06959595 Loxophyllum shini 1346494 SAR_Eukaryotes SAR_Eukaryotes 455 1.7900000000000002e-123   NTclustered gi|375305428|gb|JF975388.1| 1346494 g3634 i0 94.558 98.7050847457627 294 16 99 0 1 294 1339 1046 Loxophyllum shini isolate PHB2007053101 28S ribosomal RNA gene, partial sequence blastn 29118 455 1 Eukaryota Sar   Ciliophora Litostomatea Pleurostomatida Litonotidae Loxophyllum Loxophyllum shini
18135429 18135429 PRJNA1132896_P_NODE_8115_length_247_cov_0.885057_g8024_i0 PRJNA1132896 8115 247 0.885057 2.18609079 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 424 4.1099999999999996e-114   NTclustered gi|662862630|gb|KJ000270.1| 151077 g8024 i0 97.571 3.88259109311741 247 6 100 0 1 247 414 168 Chilodonella uncinata strain ATCC PRA-256 clone P7 protein kinase domain containing protein gene, partial cds; macronuclear blastn 959 424 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
21960415 21960415 PRJNA1132896_P_NODE_5238_length_271_cov_1.863636_g5147_i0 PRJNA1132896 5238 271 1.863636 5.05045356 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|118399045|ref|XM_001031849.1| 312017 g5147 i0 100 0.107011070110701 29 0 11 0 174 202 2034 2006 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 29 54.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;