RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1132896" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1132896 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2834252 2834252 PRJNA1132896_P_NODE_10223_length_241_cov_0.916667_g10132_i0 PRJNA1132896 10223 241 0.916667 2.20916747 Chlorella variabilis 554065 Plants Plants 104 5.9e-18   NTclustered gi|552815320|ref|XM_005844353.1| 554065 g10132 i0 82.5 0.49792531120332 120 19 49 2 103 221 300 418 Chlorella variabilis hypothetical protein (CHLNCDRAFT_32566) mRNA, complete cds blastn 120 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
6661507 6661507 PRJNA1132896_P_NODE_6146_length_258_cov_2.335135_g6055_i0 PRJNA1132896 6146 258 2.335135 6.0246483 Jenufa perforata 993091 Plants Plants 78.7 3.87e-10   NTclustered gi|1829768140|ref|NC_046779.1| 993091 g6055 i0 92.857 0.217054263565891 56 1 21 3 35 89 19706 19759 Jenufa perforata culture CAUP:H8101 mitochondrion, complete genome blastn 56 78.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa perforata
13037320 13037320 PRJNA1132896_P_NODE_3111_length_317_cov_4.118852_g3020_i0 PRJNA1132896 3111 317 4.118852 13.05676084 Auxenochlorella pyrenoidosa 3078 Plants Plants 569 6.629999999999998e-158   NTclustered gi|1201359271|gb|MF040793.1| 3078 g3020 i0 99.054 102.261829652997 317 3 100 0 1 317 1702 1386 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 32417 569 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;