RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1132896" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA1132896 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5386817 5386817 PRJNA1132896_P_NODE_2845_length_330_cov_1.198444_g2754_i0 PRJNA1132896 2845 330 1.198444 3.9548652 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 593 4.119999999999999e-165   NTclustered gi|225696219|gb|FJ805886.1| 259957 g2754 i0 99.091 113.324242424242 330 3 100 0 1 330 2581 2252 Uncultured Chroococcidiopsis sp. clone NA4_4 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 37397 593 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.
24509586 24509586 PRJNA1132896_P_NODE_5640_length_265_cov_2.218750_g5549_i0 PRJNA1132896 5640 265 2.21875 5.8796875 Synechococcus sp. CBW1107 2789857 Bacteria Bacteria 137 6.5e-28   NTclustered gi|2638498304|emb|OY986430.1| 2789857 g5549 i0 79 13.577358490566 200 42 75 0 14 213 1782203 1782402 Synechococcus sp. CBW1107 isolate KAC_114 genome assembly, chromosome: 1 blastn 3598 137 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. CBW1107
25258084 25258084 PRJNA1132896_P_NODE_5380_length_269_cov_1.556122_g5289_i0 PRJNA1132896 5380 269 1.556122 4.18596818 Chroococcidiopsis 54298 Bacteria Bacteria 464 2.67e-126   NTclustered gi|146740648|emb|AM709635.1| 171389 g5289 i0 97.77 178.60594795539 269 6 100 0 1 269 3162 2894 Chroococcidiopsis sp. SAG 2025 partial ribosomal RNA operon, strain SAG 2025 blastn 48045 464 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis sp. SAG 2025

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;