RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA1132896" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 16 ✖

bioproject 1

  • PRJNA1132896 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1558204 1558204 PRJNA1132896_P_NODE_3182_length_315_cov_1.272727_g3091_i0 PRJNA1132896 3182 315 1.272727 4.00909005 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 130 1.32e-25   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g3091 i0 87.611 31.7460317460317 113 13 36 1 9 120 219 107 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 10000 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2834259 2834259 PRJNA1132896_P_NODE_1283_length_461_cov_2.649485_g1192_i0 PRJNA1132896 1283 461 2.649485 12.21412585 Badhamia melanospora 1346252 Evosea other_Eukaryota 429 1.7699999999999996e-115   NTclustered gi|2440757457|gb|OP616492.1| 1346252 g1192 i0 83.589 96.9197396963124 457 73 99 2 3 458 469 14 Badhamia melanospora voucher LE266197 translation elongation factor 1-alpha (EF1A) gene, partial cds blastn 44680 429 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Badhamia Badhamia melanospora
2834331 2834331 PRJNA1132896_P_NODE_863_length_554_cov_44.110187_g772_i0 PRJNA1132896 863 554 44.110187 244.37043598 Vannella sp. strain CAZ6/I 325077 Discosea other_Eukaryota 931 0   NTclustered gi|62865939|gb|AY929914.1| 325077 g772 i0 97.107 101.675090252708 553 15 99 1 2 554 1091 540 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 56328 931 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I
5386814 5386814 PRJNA1132896_P_NODE_2545_length_345_cov_1.529412_g2454_i0 PRJNA1132896 2545 345 1.529412 5.2764714 Diderma niveum 372584 Evosea other_Eukaryota 257 6.45e-64   NTclustered gi|381140154|emb|HE655061.1| 372584 g2454 i0 80.912 60.4492753623188 351 46 100 17 1 345 3372 3037 Diderma niveum partial 28S rRNA gene, isolate Uk-K79 blastn 20855 257 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Diderma Diderma niveum
6661526 6661526 PRJNA1132896_P_NODE_7346_length_249_cov_2.187500_g7255_i0 PRJNA1132896 7346 249 2.1875 5.446875 Diderma europaeum 2656919 Evosea other_Eukaryota 399 6.989999999999999e-107   NTclustered gi|118577471|gb|DQ903677.1| 2656919 g7255 i0 95.582 100.076305220884 249 11 100 0 1 249 947 1195 Diderma globosum var. europaeum voucher AMFD110 small subunit ribosomal RNA gene, partial sequence blastn 24919 399 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Diderma Diderma europaeum
10487195 10487195 PRJNA1132896_P_NODE_9169_length_244_cov_0.900585_g9078_i0 PRJNA1132896 9169 244 0.900585 2.1974274 Physarum polycephalum 5791 Evosea other_Eukaryota 195 3.46e-45   NTclustered gi|326632058|gb|HQ849399.1| 5791 g9078 i0 83.178 3.70901639344262 214 34 87 2 32 244 2058 2270 Physarum polycephalum strain M3CVIII 23S large subunit ribosomal RNA, complete sequence; mitochondrial blastn 905 195 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
12510500 12510500 PRJNA1132896_P_NODE_490_length_749_cov_1.326923_g404_i0 PRJNA1132896 490 749 1.326923 9.93865327 Didymium 5792 Evosea other_Eukaryota 433 2.2899999999999996e-116   NTclustered gi|2687|emb|X60210.1| 5793 g404 i0 85.45 6.07076101468625 433 44 58 11 1 431 1769 2184 D.iridis LSU rRNA gene blastn 4547 433 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
14312587 14312587 PRJNA1132896_P_NODE_812_length_571_cov_4.819277_g721_i0 PRJNA1132896 812 571 4.819277 27.51807167 Dictyostelium purpureum 5786 Evosea other_Eukaryota 254 1.44e-62   NTclustered gi|330799393|ref|XM_003287682.1| 5786 g721 i0 80.851 6.87565674255692 329 58 57 4 14 341 515 191 Dictyostelium purpureum 40S ribosomal protein S2 (DICPUDRAFT_32959), partial mRNA blastn 3926 254 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
16860795 16860795 PRJNA1132896_P_NODE_2114_length_373_cov_1.903333_g2023_i0 PRJNA1132896 2114 373 1.903333 7.09943209 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 303 8.87e-78   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g2023 i0 82.123 20.8525469168901 358 60 95 4 1 356 2117 1762 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 7778 303 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16860796 16860796 PRJNA1132896_P_NODE_214_length_1114_cov_21.984630_g160_i0 PRJNA1132896 214 1114 21.98463 244.9087782 Vannella sp. strain CAZ6/I 325077 Discosea other_Eukaryota 926 0   NTclustered gi|62865939|gb|AY929914.1| 325077 g160 i0 96.931 49.9174147217235 554 13 49 3 563 1113 3 555 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 55608 926 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I
19409514 19409514 PRJNA1132896_P_NODE_3676_length_296_cov_2.932735_g3585_i0 PRJNA1132896 3676 296 2.932735 8.6808956 Vannella septentrionalis 197531 Discosea other_Eukaryota 388 1.84e-103   NTclustered gi|300078499|gb|GU001161.1| 197531 g3585 i0 90.429 66.4560810810811 303 17 99 10 3 296 3492 3791 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19671 388 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
19409553 19409553 PRJNA1132896_P_NODE_756_length_589_cov_4.618217_g666_i0 PRJNA1132896 756 589 4.618217 27.20129813 Dictyostelium purpureum 5786 Evosea other_Eukaryota 104 1.58e-17   NTclustered gi|330790854|ref|XM_003283463.1| 5786 g666 i0 73.759 0.721561969439728 282 66 48 6 108 388 118 392 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_93471), partial mRNA blastn 425 104 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
21960380 21960380 PRJNA1132896_P_NODE_1098_length_495_cov_2.431280_g1007_i0 PRJNA1132896 1098 495 2.43128 12.034836 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 760 0   NTclustered gi|365928255|gb|JN825705.1| 590481 g1007 i0 95.616 49.779797979798 479 12 96 8 1 475 630 1103 Uncultured Amoebozoa clone Alchichica_AQ2b_5E_39 small subunit ribosomal RNA gene, partial sequence blastn 24641 760 1 Eukaryota Amoebozoa             uncultured Amoebozoa
21960381 21960381 PRJNA1132896_P_NODE_1538_length_427_cov_3.104520_g1447_i0 PRJNA1132896 1538 427 3.10452 13.2563004 Platyamoeba placida 3454475 Discosea other_Eukaryota 472 2.67e-128   NTclustered gi|33946348|gb|AY294153.1| 197527 g1447 i0 90.476 85.2693208430913 357 34 84 0 69 425 538 894 Platyamoeba placida actin mRNA, partial cds blastn 36410 472 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
21960463 21960463 PRJNA1132896_P_NODE_938_length_533_cov_43.550000_g847_i0 PRJNA1132896 938 533 43.55 232.1215 Ripella decalvata 2047822 Discosea other_Eukaryota 835 0   NTclustered gi|1269228425|gb|MF683550.1| 2047822 g847 i0 95.31 100.373358348968 533 13 99 11 1 529 1133 1657 Ripella decalvata clone 26.2.4 18S ribosomal RNA gene, partial sequence blastn 53499 835 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
23235947 23235947 PRJNA1132896_P_NODE_59_length_1843_cov_3.140113_g45_i0 PRJNA1132896 59 1843 3.140113 57.87228259 Dictyostelium purpureum 5786 Evosea other_Eukaryota 966 0   NTclustered gi|330818764|ref|XM_003291461.1| 5786 g45 i0 77.348 84.1150298426479 1682 350 91 27 159 1826 1677 13 Dictyostelium purpureum heat shock protein (DICPUDRAFT_49867), partial mRNA blastn 155024 966 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;