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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1129273" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1129273 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1031656 1031656 PRJNA1129273_P_NODE_4961_length_320_cov_1.789474_g4681_i0 PRJNA1129273 4961 320 1.789474 5.7263168 Cricetidae 337677 Chordata Chordata 52.8 0.03   NTclustered gi|2246065583|ref|XM_048442227.1| 447135 g4681 i0 96.875 0.6 32 0 10 1 54 85 731 701 PREDICTED: Myodes glareolus bile acid receptor-like (LOC125405635), transcript variant X2, mRNA blastn 192 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Myodes Myodes glareolus
11761901 11761901 PRJNA1129273_P_NODE_9230_length_248_cov_1.320000_g8950_i0 PRJNA1129273 9230 248 1.32 3.2736 Sciurus carolinensis 30640 Chordata Chordata 52.8 0.022   NTclustered gi|2219436147|ref|XM_047533143.1| 30640 g8950 i0 100 0.338709677419355 28 0 11 0 219 246 2914 2941 PREDICTED: Sciurus carolinensis sorting nexin 8 (Snx8), transcript variant X3, mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Sciurus Sciurus carolinensis
17609353 17609353 PRJNA1129273_P_NODE_8674_length_251_cov_0.876404_g8394_i0 PRJNA1129273 8674 251 0.876404 2.19977404 Bovidae 9895 Chordata Chordata 213 9.86e-51   NTclustered gi|1068294018|gb|KX592814.1| 9913 g8394 i0 89.881 91.6135458167331 168 13 68 4 86 251 10869026 10869191 Bos taurus isolate Dominette_000065F genomic sequence blastn 22995 213 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
21433562 21433562 PRJNA1129273_P_NODE_11097_length_228_cov_3.554839_g10817_i0 PRJNA1129273 11097 228 3.554839 8.10503292 Artiodactyla 91561 Chordata Chordata 292 1.1e-74   NTclustered gi|2871639840|ref|XM_070463572.1| 9874 g10817 i0 89.956 602.219298245614 229 19 99 2 3 227 2839 3067 PREDICTED: Odocoileus virginianus Holliday junction recognition protein (HJURP), transcript variant X1, mRNA blastn 137306 292 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Odocoileus Odocoileus virginianus
21960023 21960023 PRJNA1129273_P_NODE_2738_length_459_cov_2.984456_g2460_i0 PRJNA1129273 2738 459 2.984456 13.69865304 Lampetra fluviatilis 7748 Chordata Chordata 52.8 0.045   NTclustered gi|2805736765|emb|OZ078441.1| 7748 g2460 i0 100 0.0610021786492375 28 0 6 0 254 281 3545844 3545871 Lampetra fluviatilis genome assembly, chromosome: 38 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
21960076 21960076 PRJNA1129273_P_NODE_8918_length_250_cov_0.870056_g8638_i0 PRJNA1129273 8918 250 0.870056 2.17514 Mus musculus 10090 Chordata Chordata 460 3.17e-125   NTclustered gi|354786133|gb|JN950634.1| 10090 g8638 i0 100 2.988 249 0 99 0 2 250 26788 26540 Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele Casd1:tm1a(EUCOMM)Hmgu; transgenic blastn 747 460 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
23235584 23235584 PRJNA1129273_P_NODE_4639_length_332_cov_1.347490_g4359_i0 PRJNA1129273 4639 332 1.34749 4.4736668 Tupaia chinensis 246437 Chordata Chordata 165 3.85e-36   NTclustered gi|1561705453|ref|XM_014584312.2| 246437 g4359 i0 80.645 50.7981927710843 217 38 64 4 115 328 380 165 PREDICTED: Tupaia chinensis 40S ribosomal protein S20 (LOC106733939), mRNA blastn 16865 165 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Scandentia Tupaiidae Tupaia Tupaia chinensis
24509259 24509259 PRJNA1129273_P_NODE_9180_length_248_cov_2.628571_g8900_i0 PRJNA1129273 9180 248 2.628571 6.51885608 Canis lupus 9612 Chordata Chordata 329 9.249999999999998e-86   NTclustered gi|2272530954|ref|XR_007409564.1| 286419 g8900 i0 90.763 11.0645161290323 249 20 99 3 2 248 1568 1815 PREDICTED: Canis lupus dingo uncharacterized LOC125754758 (LOC125754758), transcript variant X1, ncRNA blastn 2744 329 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;