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contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA1129273" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 20 ✖

bioproject 1

  • PRJNA1129273 · 20 ✖

analysis 1

  • blastn · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
283258 283258 PRJNA1129273_P_NODE_4761_length_326_cov_7.976285_g4481_i0 PRJNA1129273 4761 326 7.976285 26.0026891 Blidingia sp. DT1 2022611 Plants Plants 342 1.6199999999999994e-89   NTclustered gi|1220117795|gb|KY401415.1| 2022611 g4481 i0 85.933 83.4355828220859 327 39 99 6 2 325 3264 2942 Blidingia sp. DT1 28S ribosomal RNA gene, partial sequence blastn 27200 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Blidingia Blidingia sp. DT1
1031653 1031653 PRJNA1129273_P_NODE_2061_length_554_cov_4.347193_g1787_i0 PRJNA1129273 2061 554 4.347193 24.08344922 Trebouxia 13786 Plants Plants 985 0   NTclustered gi|21631|emb|Z21553.1| 13787 g1787 i0 98.736 100.027075812274 554 7 100 0 1 554 1144 591 T.asymmetrica gene encoding 18S ribosomal RNA blastn 55415 990 0.994949494949495 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
1557876 1557876 PRJNA1129273_P_NODE_7942_length_259_cov_1.956989_g7662_i0 PRJNA1129273 7942 259 1.956989 5.06860151 Trebouxia lynnae 1825957 Plants Plants 433 7.21e-117   NTclustered gi|1812100161|ref|NC_045839.1| 1825957 g7662 i0 96.899 108.081081081081 258 8 99 0 2 259 178794 179051 Trebouxia sp. TR9 chloroplast, partial genome blastn 27993 433 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
1557901 1557901 PRJNA1129273_P_NODE_9962_length_245_cov_0.883721_g9682_i0 PRJNA1129273 9962 245 0.883721 2.16511645 Trebouxia aggregata 160068 Plants Plants 342 1.17e-89   NTclustered gi|162134279|gb|EU123962.1| 160068 g9682 i0 94.57 3.3469387755102 221 12 90 0 24 244 7664 7884 Trebouxia aggregata strain SAG 219-1d cell division protein (ftsH) gene, complete cds; chloroplast blastn 820 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
2307000 2307000 PRJNA1129273_P_NODE_1002_length_869_cov_15.100503_g778_i0 PRJNA1129273 1002 869 15.100503 131.22337107 Trebouxia 13786 Plants Plants 1474 0   NTclustered gi|1273623725|gb|KY033354.1| 285713 g778 i0 97.581 98.0092059838895 868 8 99 1 2 869 5960 6814 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 85170 1485 0.992592592592593 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
5386469 5386469 PRJNA1129273_P_NODE_7065_length_271_cov_2.196970_g6785_i0 PRJNA1129273 7065 271 2.19697 5.9537887 Uvulifera verrucariae 381758 Plants Plants 401 2.1399999999999994e-107   NTclustered gi|922575234|gb|JQ921003.1| 381758 g6785 i0 93.358 104.121771217712 271 18 100 0 1 271 467 197 Coccobotrys verrucariae strain SAG 16.97 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 28217 401 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae Uvulifera Uvulifera verrucariae
6661097 6661097 PRJNA1129273_P_NODE_10946_length_233_cov_2.268750_g10666_i0 PRJNA1129273 10946 233 2.26875 5.2861875 Hazenia capsulata 2202518 Plants Plants 180 9.169999999999999e-41   NTclustered gi|17028245|gb|L42837.1|CMKCPRGOL 2202518 g10666 i0 80.973 9.22317596566524 226 43 97 0 2 227 2113 1888 Hazenia capsulata large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 2149 180 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Hazeniaceae Hazenia Hazenia capsulata
7409560 7409560 PRJNA1129273_P_NODE_11046_length_230_cov_2.363057_g10766_i0 PRJNA1129273 11046 230 2.363057 5.4350311 Chlorophyta 3041 Plants Plants 422 1.36e-113   NTclustered gi|345425754|gb|JN573875.1| 1077721 g10766 i0 100 98.295652173913 228 0 99 0 2 229 60 287 Dilabifilum sp. W1017 18S ribosomal RNA gene, partial sequence blastn 22608 422 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae Dilabifilum Dilabifilum sp. W1017
7936289 7936289 PRJNA1129273_P_NODE_5807_length_292_cov_2.853881_g5527_i0 PRJNA1129273 5807 292 2.853881 8.33333252 Stichococcus bacillaris 37433 Plants Plants 342 1.4299999999999999e-89   NTclustered gi|371782093|emb|HE610125.1| 37433 g5527 i0 97.97 64.1301369863014 197 4 67 0 95 291 7182 6986 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 18726 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
10486750 10486750 PRJNA1129273_P_NODE_11289_length_214_cov_5.021277_g11009_i0 PRJNA1129273 11289 214 5.021277 10.74553278 Coccomyxa subellipsoidea 248742 Plants Plants 279 7.940000000000001e-71   NTclustered gi|1360638125|gb|AC277041.1| 574566 g11009 i0 90.909 17.2102803738318 209 17 97 2 5 212 39769 39562 Coccomyxa subellipsoidea C-169 clone FAHX05-A01, complete sequence blastn 3683 279 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
10486768 10486768 PRJNA1129273_P_NODE_4649_length_331_cov_5.717054_g4369_i0 PRJNA1129273 4649 331 5.717054 18.92344874 Annulotesta cochlephila 2779403 Plants Plants 508 1.54e-139   NTclustered gi|2085887820|dbj|LC577593.1| 2779403 g4369 i0 94.562 100.117824773414 331 14 99 4 3 330 740 411 Annulotesta cochlephila NN-OKN1A genes for 5.8S rRNA, ITS2 and 28S rRNA, partial and complete sequence blastn 33139 508 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Kornmanniaceae Annulotesta Annulotesta cochlephila
11761841 11761841 PRJNA1129273_P_NODE_10930_length_233_cov_2.893750_g10650_i0 PRJNA1129273 10930 233 2.89375 6.7424375 Trebouxia sp. SL0000003 3350044 Plants Plants 307 4.03e-79   NTclustered gi|2917929620|emb|OZ234908.1| 3350044 g10650 i0 90.598 1.00429184549356 234 19 99 1 2 232 559173 558940 Trebouxia sp. SL0000003 genome assembly, chromosome: 3 blastn 234 307 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
13785005 13785005 PRJNA1129273_P_NODE_3431_length_396_cov_2.160991_g3151_i0 PRJNA1129273 3431 396 2.160991 8.55752436 Bracteacoccus 50036 Plants Plants 719 0   NTclustered gi|6119992|gb|AF183452.1| 50037 g3151 i0 99.494 99.5151515151515 395 2 99 0 1 395 1822 1428 Bracteacoccus minor strain UTEX 66 28S ribosomal RNA gene, partial sequence blastn 39408 725 0.991724137931035 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus minor
16334081 16334081 PRJNA1129273_P_NODE_3153_length_418_cov_8.115942_g2874_i0 PRJNA1129273 3153 418 8.115942 33.92463756 Halofilum 1929135 Plants Plants 758 0   NTclustered gi|1189013853|gb|MF034634.1| 97102 g2874 i0 99.519 99.1435406698565 416 2 99 0 2 417 1193 1608 Halofilum salinum strain SAG 1.95 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 41442 763 0.993446920052425 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales   Halofilum Halofilum salinum
16860416 16860416 PRJNA1129273_P_NODE_11034_length_230_cov_2.872611_g10754_i0 PRJNA1129273 11034 230 2.872611 6.6070053 Chloroidium ellipsoideum 63676 Plants Plants 357 3.89e-94   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g10754 i0 94.76 100.813043478261 229 12 99 0 1 229 3052 2824 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 23187 357 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
16860426 16860426 PRJNA1129273_P_NODE_3454_length_394_cov_5.931464_g3174_i0 PRJNA1129273 3454 394 5.931464 23.36996816 Blidingia sp. DT1 2022611 Plants Plants 597 3.859999999999998e-166   NTclustered gi|1220117795|gb|KY401415.1| 2022611 g3174 i0 94.148 99.8604060913706 393 22 99 1 2 393 1800 1408 Blidingia sp. DT1 28S ribosomal RNA gene, partial sequence blastn 39345 597 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Blidingia Blidingia sp. DT1
16860453 16860453 PRJNA1129273_P_NODE_6754_length_276_cov_2.261084_g6474_i0 PRJNA1129273 6754 276 2.261084 6.24059184 Trebouxia aggregata 160068 Plants Plants 496 9.75e-136   NTclustered gi|162134351|gb|EU123983.1| 160068 g6474 i0 99.27 98.5724637681159 274 2 99 0 2 275 1870 2143 Trebouxia aggregata strain SAG 219-1d D1 reaction center protein of photosystem II (psbA) and hypothetical protein (orf341) genes, complete cds; and tRNA-His (trnH(gug)) and tRNA-Gly (trnG(ucc)) genes, complete sequence; chloroplast blastn 27206 496 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
20684707 20684707 PRJNA1129273_P_NODE_9077_length_249_cov_0.880682_g8797_i0 PRJNA1129273 9077 249 0.880682 2.19289818 Gormaniella terricola 2904618 Plants Plants 97.1 1.03e-15   NTclustered gi|2312623667|ref|NC_066823.1| 2904618 g8797 i0 86.813 35.2771084337349 91 7 35 4 1 86 9611 9521 Gormaniella terricola chloroplast, complete genome blastn 8784 97.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetopeltidales Chaetopeltidaceae Gormaniella Gormaniella terricola
21960031 21960031 PRJNA1129273_P_NODE_4198_length_351_cov_13.794964_g3918_i0 PRJNA1129273 4198 351 13.794964 48.42032364 Trebouxia lynnae 1825957 Plants Plants 634 2.5899999999999996e-177   NTclustered gi|1016111943|gb|KU716051.1| 1825957 g3918 i0 99.427 70.025641025641 349 2 99 0 2 350 6992 6644 Trebouxia lynnae 26S-18S intergenic spacer region, partial sequence; 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence; and 26S-18S rRNA intergenic spacer region, partial sequence blastn 24579 634 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
23235567 23235567 PRJNA1129273_P_NODE_1239_length_764_cov_4.429812_g988_i0 PRJNA1129273 1239 764 4.429812 33.84376368 Trebouxia gigantea 103878 Plants Plants 1402 0   NTclustered gi|922575246|gb|JQ921008.1| 103878 g988 i0 99.869 82.8769633507853 762 1 99 0 3 764 776 15 Trebouxia gigantea strain UTEX 2231 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 63318 1402 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia gigantea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;