RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1129273" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 6 ✖

bioproject 1

  • PRJNA1129273 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1557883 1557883 PRJNA1129273_P_NODE_8562_length_252_cov_0.865922_g8282_i0 PRJNA1129273 8562 252 0.865922 2.18212344 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 457 4.14e-124   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g8282 i0 99.6 55.8095238095238 250 1 99 0 2 251 1615 1366 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 14064 457 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
2833954 2833954 PRJNA1129273_P_NODE_7563_length_264_cov_3.214660_g7283_i0 PRJNA1129273 7563 264 3.21466 8.4867024 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 484 2.0099999999999994e-132   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g7283 i0 100 16.3295454545455 262 0 99 0 1 262 165 426 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 4311 484 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
6134517 6134517 PRJNA1129273_P_NODE_9265_length_248_cov_0.885714_g8985_i0 PRJNA1129273 9265 248 0.885714 2.19657072 Leishmania 5658 Euglenozoa other_Eukaryota 52.8 0.022   NTclustered gi|2794772900|ref|XM_067833934.1| 5663 g8985 i0 100 0.338709677419355 28 0 11 0 83 110 1224 1197 Leishmania enriettii uncharacterized protein (CUR178_02173), partial mRNA blastn 84 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania enriettii
9211275 9211275 PRJNA1129273_P_NODE_6508_length_280_cov_1.483092_g6228_i0 PRJNA1129273 6508 280 1.483092 4.1526576 Euglena granulata 69255 Euglenozoa other_Eukaryota 207 5.2e-49   NTclustered gi|944275086|gb|KT305136.1| 69255 g6228 i0 84.434 141.185714285714 212 31 76 1 50 261 840 631 Euglena granulata strain ACOI921 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 39532 207 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena granulata
11761862 11761862 PRJNA1129273_P_NODE_5030_length_317_cov_1.709016_g4750_i0 PRJNA1129273 5030 317 1.709016 5.41758072 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 135 2.8700000000000003e-27   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g4750 i0 86.885 10.7665615141956 122 15 38 1 1 122 4265 4145 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3413 135 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
23235571 23235571 PRJNA1129273_P_NODE_2559_length_478_cov_1.671605_g2283_i0 PRJNA1129273 2559 478 1.671605 7.9902719 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 881 0   NTclustered gi|418968548|gb|KC164233.1| 74082 g2283 i0 100 84.1213389121339 477 0 99 0 2 478 109 585 Vahlkampfia avara clone CF1-119 18S ribosomal RNA gene, partial sequence blastn 40210 881 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;