RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1126661" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1126661 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
282160 282160 PRJNA1126661_P_NODE_15601_length_326_cov_4.885375_g15072_i0 PRJNA1126661 15601 326 4.885375 15.9263225 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 182 3.749999999999999e-41   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g15072 i0 89.041 1.17791411042945 146 16 45 0 3 148 13910 14055 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 384 182 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
2833488 2833488 PRJNA1126661_P_NODE_80843_length_222_cov_4.550336_g80313_i0 PRJNA1126661 80843 222 4.550336 10.10174592 Luteolibacter sp. Populi 3230487 Bacteria Bacteria 241 3.9200000000000003e-59   NTclustered gi|2774618348|gb|CP161812.1| 3230487 g80313 i0 88.119 0.90990990990991 202 24 91 0 1 202 367878 368079 Luteolibacter sp. Populi chromosome, complete genome blastn 202 241 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. Populi
11234525 11234525 PRJNA1126661_P_NODE_74589_length_242_cov_0.923077_g74059_i0 PRJNA1126661 74589 242 0.923077 2.23384634 Akkermansia 239934 Bacteria Bacteria 246 9.32e-61   NTclustered gi|183579827|emb|AM905424.1| 239935 g74059 i0 88.945 243.409090909091 199 22 82 0 1 199 1001 1199 Akkermansia muciniphila 23S rRNA gene, strain CIP107961 blastn 58905 246 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
15585582 15585582 PRJNA1126661_P_NODE_61253_length_275_cov_2.113861_g60723_i0 PRJNA1126661 61253 275 2.113861 5.81311775 Opitutus sp. GAS368 1882749 Bacteria Bacteria 206 1.83e-48   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g60723 i0 91.333 5.03272727272727 150 13 100 0 126 275 1210119 1209970 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 1384 206 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;