RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1126661" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1126661 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10485688 10485688 PRJNA1126661_P_NODE_15749_length_326_cov_4.837945_g15220_i0 PRJNA1126661 15749 326 4.837945 15.7717007 Nannocystis punicea 2995304 Bacteria Bacteria 124 6.399999999999999e-24   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g15220 i0 84.091 0.404907975460123 132 17 40 4 22 151 11244021 11244150 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 132 124 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
16859582 16859582 PRJNA1126661_P_NODE_33754_length_301_cov_8.473684_g33225_i0 PRJNA1126661 33754 301 8.473684 25.50578884 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 191 5.69e-44   NTclustered gi|2108117163|gb|CP070734.1| 2026735 g33225 i0 89.474 55.0232558139535 152 14 50 2 151 301 1345326 1345176 MAG: Deltaproteobacteria bacterium isolate bin407 chromosome blastn 16562 191 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
23234448 23234448 PRJNA1126661_P_NODE_11439_length_326_cov_6.430830_g10910_i0 PRJNA1126661 11439 326 6.43083 20.9645058 Melittangium boletus 83453 Bacteria Bacteria 119 2.98e-22   NTclustered gi|1243026503|gb|CP022163.1| 1294270 g10910 i0 89.362 1.6319018404908 94 10 29 0 57 150 36992 37085 Melittangium boletus DSM 14713 chromosome, complete genome blastn 532 119 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Melittangium Melittangium boletus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;